RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 UNC5CO95185 931 aa7.53□□□□□ -1.2
SCN9A-201ENST00000303354 ATE1O95260 518 aa7.53□□□□□ -1.2
SCN9A-201ENST00000303354 ZNF3P17036 446 aa7.53□□□□□ -1.2
SCN9A-201ENST00000303354 NAA10P41227 235 aaPredicted RBP7.53□□□□□ -1.2
SCN9A-201ENST00000303354 AFF1P51825 1210 aaKnown RBP7.53□□□□□ -1.2
SCN9A-201ENST00000303354 ZNF782Q6ZMW2 699 aaPredicted RBP7.53□□□□□ -1.2
SCN9A-201ENST00000303354 SMPDL3AQ92484 453 aa7.53□□□□□ -1.2
SCN9A-201ENST00000303354 NXF5Q9H1B4 397 aaKnown RBP7.53□□□□□ -1.2
SCN9A-201ENST00000303354 BATF3Q9NR55 127 aa7.53□□□□□ -1.2
SCN9A-201ENST00000303354 DZANK1Q9NVP4 752 aa7.53□□□□□ -1.2
SCN9A-201ENST00000303354 Q9Y3F1 56 aa7.53□□□□□ -1.2
SCN9A-201ENST00000303354 A8MT66 165 aa7.53□□□□□ -1.2
SCN9A-201ENST00000303354 PDYNP01213 254 aa7.53□□□□□ -1.2
SCN9A-201ENST00000303354 ARPC4P59998 168 aa7.53□□□□□ -1.2
SCN9A-201ENST00000303354 SQSTM1Q13501 440 aa7.53□□□□□ -1.2
SCN9A-201ENST00000303354 SHHQ15465 462 aa7.53□□□□□ -1.2
SCN9A-201ENST00000303354 CST9Q5W186 159 aa7.53□□□□□ -1.2
SCN9A-201ENST00000303354 PSAPL1Q6NUJ1 521 aa7.53□□□□□ -1.2
SCN9A-201ENST00000303354 LINC00696Q6ZRV3 163 aa7.53□□□□□ -1.2
SCN9A-201ENST00000303354 KCTD9Q7L273 389 aa7.53□□□□□ -1.2
SCN9A-201ENST00000303354 OR52B2Q96RD2 323 aa7.53□□□□□ -1.2
SCN9A-201ENST00000303354 SLC45A1Q9Y2W3 748 aa7.53□□□□□ -1.2
SCN9A-201ENST00000303354 SMCO3A2RU48 225 aa7.52□□□□□ -1.2
SCN9A-201ENST00000303354 MEN1O00255 615 aa7.52□□□□□ -1.2
SCN9A-201ENST00000303354 POLR1CO15160 346 aaPredicted RBP7.52□□□□□ -1.2
SCN9A-201ENST00000303354 EDF1O60869 148 aaKnown RBP7.52□□□□□ -1.2
SCN9A-201ENST00000303354 CSNK1EP49674 416 aaKnown RBP7.52□□□□□ -1.2
SCN9A-201ENST00000303354 ZNF234Q14588 700 aa7.52□□□□□ -1.2
SCN9A-201ENST00000303354 EIPR1Q53HC9 387 aa7.52□□□□□ -1.2
SCN9A-201ENST00000303354 CSNK1A1LQ8N752 337 aa7.52□□□□□ -1.2
SCN9A-201ENST00000303354 SLC17A9Q9BYT1 436 aa7.52□□□□□ -1.2
SCN9A-201ENST00000303354 SLAMF7Q9NQ25 335 aa7.52□□□□□ -1.2
SCN9A-201ENST00000303354 FARSBQ9NSD9 589 aaKnown RBP7.52□□□□□ -1.2
SCN9A-201ENST00000303354 LDB3O75112 727 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 TNFRSF1BP20333 461 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 AQP11Q8NBQ7 271 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 ZNF224Q9NZL3 707 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 MRPL15Q9P015 296 aaKnown RBP7.52□□□□□ -1.21
SCN9A-201ENST00000303354 CNTN6Q9UQ52 1028 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 BACE2Q9Y5Z0 518 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 COQ9O75208 318 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 SELENOVP59797 346 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 ERVFC1P60507 584 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 SERINC3Q13530 473 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 DPYSL2Q16555 572 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 TIMM50Q3ZCQ8 353 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 OR4K14Q8NGD5 310 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 ASB12Q8WXK4 309 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 DLG3Q92796 817 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 POLDIP3Q9BY77 421 aaKnown RBP7.52□□□□□ -1.21
SCN9A-201ENST00000303354 OR51I1Q9H343 314 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 CCDC163A0A0D9SF12 145 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 A0A1W2PRQ8 180 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 A8MVJ9 347 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 RGS10O43665 173 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 AHSA1O95433 338 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 PTGIRP43119 386 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 GBX2P52951 348 aaPredicted RBP7.52□□□□□ -1.21
SCN9A-201ENST00000303354 MAT1AQ00266 395 aaKnown RBP7.52□□□□□ -1.21
SCN9A-201ENST00000303354 PLP2Q04941 152 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 FGL2Q14314 439 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 PLD6Q8N2A8 252 aaKnown RBP7.52□□□□□ -1.21
SCN9A-201ENST00000303354 OR51A7Q8NH64 312 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 MCFD2Q8NI22 146 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 CHFRQ96EP1 664 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 SMURF2Q9HAU4 748 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 OXSMQ9NWU1 459 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 HPF1Q9NWY4 346 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 UBAP1Q9NZ09 502 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 GSKIPQ9P0R6 139 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 LAMP5Q9UJQ1 280 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 POFUT2Q9Y2G5 429 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 MED1Q15648 1581 aaPredicted RBP7.52□□□□□ -1.21
SCN9A-201ENST00000303354 A0A1W2PRG6 482 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 M0QX08 132 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 CNMDO75829 334 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 IL3P08700 152 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 GRIA2P42262 883 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 DLX2Q07687 328 aaPredicted RBP7.52□□□□□ -1.21
SCN9A-201ENST00000303354 C17orf99Q6UX52 265 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 TAS1R3Q7RTX0 852 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 TNFAIP8L1Q8WVP5 186 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 SAMD11Q96NU1 681 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 SMOC2Q9H3U7 446 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 SLC39A1Q9NY26 324 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 RCOR3Q9P2K3 495 aaPredicted RBP7.52□□□□□ -1.21
SCN9A-201ENST00000303354 L7N2F9 121 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 ADORA3P0DMS8 318 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 VAMP2P63027 116 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 OCLNQ16625 522 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 ADGRD1Q6QNK2 874 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 CRELD2Q6UXH1 353 aaPredicted RBP7.52□□□□□ -1.21
SCN9A-201ENST00000303354 TMED4Q7Z7H5 227 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 CREB3L4Q8TEY5 395 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 AURKBQ96GD4 344 aaPredicted RBP7.52□□□□□ -1.21
SCN9A-201ENST00000303354 RDH12Q96NR8 316 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 ZNF334Q9HCZ1 680 aaPredicted RBP7.52□□□□□ -1.21
SCN9A-201ENST00000303354 PCDHB14Q9Y5E9 798 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 NUMBLQ9Y6R0 609 aa7.52□□□□□ -1.21
SCN9A-201ENST00000303354 A0A0X1KG70 313 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms