RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 FRG2BQ96QU4 278 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 RCCD1A6NED2 376 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 LPLP06858 475 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 GNRHRP30968 328 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 DPP6P42658 865 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 GPR143P51810 404 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 BLMHQ13867 455 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 PTGR1Q14914 329 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 OR2T5Q6IEZ7 315 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 ENPP7Q6UWV6 458 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 OR2T29Q8NH02 315 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 ZDHHC12Q96GR4 267 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 RETREG1Q9H6L5 497 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 LTN1O94822 1766 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 IFNA1P01562 189 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 LHCGRP22888 699 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 PLEKHG7Q6ZR37 379 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 PSD4Q8NDX1 1056 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 HDAC2Q92769 488 aaKnown RBP9.04□□□□□ -0.96
CUX1-201ENST00000292535 C17orf62Q9BQA9 187 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 MROQ9BYG7 248 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 DPEP3Q9H4B8 488 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 ZNF701Q9NV72 531 aaPredicted RBP9.04□□□□□ -0.96
CUX1-201ENST00000292535 VNN3Q9NY84 501 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 TAS2R9Q9NYW1 312 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 REXO2Q9Y3B8 237 aaKnown RBP9.04□□□□□ -0.96
CUX1-201ENST00000292535 SMCHD1A6NHR9 2005 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 HLA-DQB2P05538 268 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 NELFEP18615 380 aaKnown RBP9.03□□□□□ -0.96
CUX1-201ENST00000292535 AQP4P55087 323 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 TMEM35AQ53FP2 167 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 SLC15A3Q8IY34 581 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 ADAMTS18Q8TE60 1221 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 DNTTIP1Q9H147 329 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 C2orf74A8MZ97 194 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 ANKRD28O15084 1053 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 PFKMP08237 780 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 ADH6P28332 368 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 GPM6BQ13491 265 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 KCTD19Q17RG1 926 aaPredicted RBP9.03□□□□□ -0.96
CUX1-201ENST00000292535 CILP2Q8IUL8 1156 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 BBS10Q8TAM1 723 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 URM1Q9BTM9 101 aaKnown RBP9.03□□□□□ -0.96
CUX1-201ENST00000292535 PARPBPQ9NWS1 579 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 COL5A2P05997 1499 aaPredicted RBP9.03□□□□□ -0.96
CUX1-201ENST00000292535 C2CD4BA6NLJ0 364 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 J3QLW9 94 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 FAM155BO75949 473 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 TYRP14679 529 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 ZNF19P17023 458 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 PREPP48147 710 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 CYBRD1Q53TN4 286 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 AADACL4Q5VUY2 407 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 GOLGA7Q7Z5G4 137 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 SPATA22Q8NHS9 363 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 CD300LFQ8TDQ1 290 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 LMX1AQ8TE12 382 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 KLK6Q92876 244 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 BMFQ96LC9 184 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 PWWP2AQ96N64 755 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 LENG8Q96PV6 779 aaPredicted RBP9.03□□□□□ -0.96
CUX1-201ENST00000292535 FCRL5Q96RD9 977 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 SLC30A2Q9BRI3 323 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 ACTR3BQ9P1U1 418 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 KIDINS220Q9ULH0 1771 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 CD72P21854 359 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 KCNC1P48547 511 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 GLT8D1Q68CQ7 371 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 LGI4Q8N135 537 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 KREMEN1Q96MU8 473 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 GSKIPQ9P0R6 139 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 MROH2AA6NES4 1674 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 C6orf47O95873 294 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 FAM43BQ6ZT52 329 aaPredicted RBP9.03□□□□□ -0.96
CUX1-201ENST00000292535 USB1Q9BQ65 265 aaKnown RBP9.03□□□□□ -0.96
CUX1-201ENST00000292535 TUBA1CQ9BQE3 449 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 TMED9Q9BVK6 235 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 C13orf42A0A1B0GVH6 325 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 C4BPAP04003 597 aaKnown RBP9.03□□□□□ -0.96
CUX1-201ENST00000292535 HOXD8P13378 290 aaPredicted RBP9.03□□□□□ -0.96
CUX1-201ENST00000292535 ARSIQ5FYB1 569 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 OR5M3Q8NGP4 307 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 NPPAP01160 153 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 ENTPD1P49961 510 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 THOC6Q86W42 341 aaKnown RBP9.03□□□□□ -0.96
CUX1-201ENST00000292535 SLC37A3Q8NCC5 494 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 THEM6Q8WUY1 208 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 DCSTAMPQ9H295 470 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 UQCRC2P22695 453 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 MYLK3Q32MK0 819 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 MOB2Q70IA6 237 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 FOXRED2Q8IWF2 684 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 NIPA2Q8N8Q9 360 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 KATNBL1Q9H079 304 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 USP2O75604 605 aaPredicted RBP9.03□□□□□ -0.96
CUX1-201ENST00000292535 CHRNA1P02708 482 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 INHAP05111 366 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 IMPDH1P20839 514 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 GLDCP23378 1020 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 CCDC120Q96HB5 630 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms