RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 CERS1P27544 350 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 SOX10P56693 466 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 FGL2Q14314 439 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 MOGQ16653 247 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 SAMD12Q8N8I0 201 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 LRRC57Q8N9N7 239 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 FBXO22Q8NEZ5 403 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 GNPDA2Q8TDQ7 276 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 CMTM7Q96FZ5 175 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 OR2B3O76000 313 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 BEST4Q8NFU0 473 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 ASB9Q96DX5 294 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 OR2M4Q96R27 311 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 ZCCHC3Q9NUD5 404 aaKnown RBP13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 CNTN3Q9P232 1028 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 hCG_1807616A0A1W2PRN6 198 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 NT5C1B-RDH14C9J2C7 533 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 AKR1C4P17516 323 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 FASLGP48023 281 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 IDH3AP50213 366 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 MTPNP58546 118 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 RHDQ02161 417 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 TRIM46Q7Z4K8 759 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 CERKQ8TCT0 537 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 KIAA1143Q96AT1 154 aaPredicted RBP13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 SLC25A51Q9H1U9 297 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 PLCXD1Q9NUJ7 323 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 ERVK-7P63135 1459 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 J3QR89 54 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 RGL2O15211 777 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 RGS9O75916 674 aaPredicted RBP13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 H2BFMP0C1H6 154 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 TSFMP43897 325 aaKnown RBP13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 PRMT2P55345 433 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 SLC22A10Q63ZE4 541 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 TMEM225Q6GV28 225 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 OR4K3Q96R72 315 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 EFCAB11Q9BUY7 163 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 ACTL8Q9H568 366 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 SSU72Q9NP77 194 aaKnown RBP13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 MAN2C1Q9NTJ4 1040 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 CHD4Q14839 1912 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 A0A1B0GVT2 93 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 MON1BQ7L1V2 547 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 IRGQQ8WZA9 623 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 EBF3Q9H4W6 596 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 GCM1Q9NP62 436 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 SRRDQ9UH36 339 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 CLIC1O00299 241 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 STBD1O95210 358 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 LENG8Q96PV6 779 aaPredicted RBP13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 RIOX1Q9H6W3 641 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 UTS2RQ9UKP6 389 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 GLI2P10070 1586 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 INHBEP58166 350 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 HERVK_113P63132 956 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 TLE1Q04724 770 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 SNAPC3Q92966 411 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 ERVK-6Q9BXR3 956 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 CDC7O00311 574 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 ANKS1BQ7Z6G8 1248 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 SLC35F5Q8WV83 523 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 CPXM1Q96SM3 734 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 NAA11Q9BSU3 229 aaPredicted RBP13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 PAPOLGQ9BWT3 736 aaKnown RBP13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 HAO2Q9NYQ3 351 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 TCAF1Q9Y4C2 921 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 NEMP2A6NFY4 417 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 NPPAP01160 153 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 DGKGP49619 791 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 FABP6P51161 128 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 CRYBB1P53674 252 aaPredicted RBP13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 FAM122CQ6P4D5 195 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 CARM1Q86X55 608 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 ARMC5Q96C12 935 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 MTERF1Q99551 399 aaKnown RBP13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 G6PC3Q9BUM1 346 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 SERTAD4Q9NUC0 356 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 INMT-MINDY4F8WBC2 141 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 SC5DO75845 299 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 RHOQP17081 205 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 PFKLP17858 780 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 KIAA1614Q5VZ46 1190 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 GPR142Q7Z601 462 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 NEIL3Q8TAT5 605 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 PYURFQ96I23 114 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 KIF25Q9UIL4 384 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 LGALS2P05162 132 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 EN1Q05925 392 aaPredicted RBP13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 RSU1Q15404 277 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 ODF4Q2M2E3 257 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 C4orf17Q53FE4 359 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 SLC28A3Q9HAS3 691 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 PBX3P40426 434 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 PPA1Q15181 289 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 AMZ1Q400G9 498 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 HACD2Q6Y1H2 254 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 PHOSPHO1Q8TCT1 267 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 PDCD2LQ9BRP1 358 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 MAGEH1Q9H213 219 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 108.3 ms