RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 GLYATL1Q969I3 302 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 OR5B12Q96R08 314 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 OR10A4Q9H209 315 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 B3GAT1Q9P2W7 334 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 RLFQ13129 1914 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 ATRNL1Q5VV63 1379 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 PNPLA6Q8IY17 1366 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 MLH3Q9UHC1 1453 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 CDC42BPGQ6DT37 1551 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 C2orf78A6NCI8 922 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 OR2AG2A6NM03 316 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 C4orf47A7E2U8 309 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 PCDH17O14917 1159 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 PROM1O43490 865 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 OR1I1O60431 355 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 RTN2O75298 545 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 RAD51DO75771 328 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 SLC25A14O95258 325 aaPredicted RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 EYA4O95677 639 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 UCHL3P15374 230 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 SLC2A5P22732 501 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 GLDCP23378 1020 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 HTR2BP41595 481 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 OR3A3P47888 321 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 OR3A2P47893 321 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 SLC13A2Q13183 592 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 GRB10Q13322 594 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 PTPRRQ15256 657 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 TCTE1Q5JU00 501 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 DUPD1Q68J44 220 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 UBALD2Q8IYN6 164 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 CPXM2Q8N436 756 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 NOA1Q8NC60 698 aaKnown RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 OR4K17Q8NGC6 315 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 SLC35G2Q8TBE7 412 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 AGAP11Q8TF27 550 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 PHF10Q8WUB8 498 aaKnown RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 CHPT1Q8WUD6 406 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 RAD51AP1Q96B01 352 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 MALSU1Q96EH3 234 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 SLC39A13Q96H72 371 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 TNFRSF13CQ96RJ3 184 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 ATP5SQ99766 215 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 TMEM43Q9BTV4 400 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 TMEM100Q9NV29 134 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 NUDT15Q9NV35 164 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 FBXW2Q9UKT8 454 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 ADAMTS5Q9UNA0 930 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 EMC9Q9Y3B6 208 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 MYOM1P52179 1685 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 CCDC163A0A0D9SF12 145 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 RAB19A4D1S5 217 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 FIGNL2A6NMB9 653 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 J3QW42 95 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 MBP02144 154 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 ALDH3B1P43353 468 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 ADAM15Q13444 863 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 PTGR1Q14914 329 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 CHRNA6Q15825 494 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 ZBED5Q49AG3 693 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 ALG1LQ6GMV1 187 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 SLC37A3Q8NCC5 494 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 MFSD8Q8NHS3 518 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 DNAJB3Q8WWF6 145 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 SLC7A6OSQ96CW6 309 aaPredicted RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 RAD9AQ99638 391 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 ACO2Q99798 780 aaKnown RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 L2HGDHQ9H9P8 463 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 NUDT4Q9NZJ9 180 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 KLRF1Q9NZS2 232 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 OPTCQ9UBM4 332 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 BCORL1Q5H9F3 1711 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 AKAP13Q12802 2813 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 GBF1Q92538 1859 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 OR6C75A6NL08 312 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 PRDX3P30048 256 aaKnown RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 NCS1P62166 190 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 HMGCS1Q01581 520 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 HSF5Q4G112 596 aaPredicted RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 C4orf17Q53FE4 359 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 KCNT2Q6UVM3 1135 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 LRRN1Q6UXK5 716 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 CYP2R1Q6VVX0 501 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 USP49Q70CQ1 688 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF565Q8N9K5 539 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 SPATA22Q8NHS9 363 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 C16orf78Q8WTQ4 265 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 RSC1A1Q92681 617 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 LGALS12Q96DT0 336 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 OR2M4Q96R27 311 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 ACTR6Q9GZN1 396 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 RANBP3Q9H6Z4 567 aaPredicted RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 AIG1Q9NVV5 245 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 GNEQ9Y223 722 aaKnown RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 TMEM184BQ9Y519 407 aaPredicted RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 PIEZO2Q9H5I5 2752 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 EDC4Q6P2E9 1401 aaKnown RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 EME2A4GXA9 379 aaPredicted RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 NCF1BA6NI72 391 aaPredicted RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 NCF1CA8MVU1 366 aaPredicted RBP2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms