RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 RPL26P61254 145 aaKnown RBP5.94□□□□□ -1.46
SCN1A-217ENST00000637988 SLC18A2Q05940 514 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 SCARB2Q14108 478 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 KCTD19Q17RG1 926 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-217ENST00000637988 BTBD16Q32M84 506 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 CREG2Q8IUH2 290 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 TCEANCQ8N8B7 351 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 OR9A2Q8NGT5 310 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 PTERQ96BW5 349 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 RPL26L1Q9UNX3 145 aaKnown RBP5.94□□□□□ -1.46
SCN1A-217ENST00000637988 A0A1W2PPW3 197 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 PGCP20142 388 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 POU5F1Q01860 360 aaKnown RBP5.94□□□□□ -1.46
SCN1A-217ENST00000637988 DPYSL2Q16555 572 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 RAD9BQ6WBX8 426 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 UTS2BQ765I0 119 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 SAPCD2Q86UD0 394 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 OR5B17Q8NGF7 314 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 SH3YL1Q96HL8 342 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-217ENST00000637988 CEP295NLQ96MC4 621 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 HSPA12BQ96MM6 686 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 HHIPQ96QV1 700 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 CDC6Q99741 560 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 OSBPL11Q9BXB4 747 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 SLC6A15Q9H2J7 730 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 NINJ2Q9NZG7 142 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 PISDQ9UG56 409 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 FKBPLQ9UIM3 349 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 FZD10Q9ULW2 581 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 D6RAR5 112 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 PAHP00439 452 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 CA3P07451 260 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 HTR1AP08908 422 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 ABHD2P08910 425 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 S1PR1P21453 382 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 HOXA9P31269 272 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 MERTKQ12866 999 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 ZNF267Q14586 743 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 RNASE12Q5GAN4 147 aaKnown RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 MTX3Q5HYI7 312 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 OGFOD2Q6N063 350 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 ZNF782Q6ZMW2 699 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 XYLT1Q86Y38 959 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 NLGN4XQ8N0W4 816 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 OR11L1Q8NGX0 322 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 MCFD2Q8NI22 146 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 GEMIN6Q8WXD5 167 aaKnown RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 MAPKAP1Q9BPZ7 522 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 KATNBL1Q9H079 304 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 MEAF6Q9HAF1 191 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 PAK6Q9NQU5 681 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 SEC14L5O43304 696 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 MFSD11O43934 449 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 CDC123O75794 336 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 CTDNEP1O95476 244 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 GSRP00390 522 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 PRPS1L1P21108 318 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 BDKRB1P46663 353 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 EIF2B2P49770 351 aaKnown RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 DSTNP60981 165 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 XIAPP98170 497 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 CST6Q15828 149 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 EEF1DP3Q658K8 133 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 KCNIP4Q6PIL6 250 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 TAC4Q86UU9 113 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 SFRP1Q8N474 314 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 CSNK1A1LQ8N752 337 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 OR2T3Q8NH03 318 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 COQ8AQ8NI60 647 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 NDRG1Q92597 394 aaKnown RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 AGAP2Q99490 1192 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 NTPCRQ9BSD7 190 aaKnown RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 PLEKHA3Q9HB20 300 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 PTRH2Q9Y3E5 179 aaKnown RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 ROBO3Q96MS0 1386 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 NRP2O60462 931 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 KRT36O76013 467 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 ZNF43P17038 809 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 XKP51811 444 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 SLC10A7Q0GE19 358 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 DBPQ10586 325 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 ST3GAL3Q11203 375 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 ZNF630Q2M218 657 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 USP30Q70CQ3 517 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 GALNT5Q7Z7M9 940 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 OR8K5Q8NH50 307 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 TOP1MTQ969P6 601 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 SLC35C1Q96A29 364 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 IER2Q9BTL4 223 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 CRB3Q9BUF7 120 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 SMG9Q9H0W8 520 aaKnown RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 SDHAF2Q9NX18 166 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 ZNF226Q9NYT6 803 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 LTBP3Q9NS15 1303 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 KIAA0100Q14667 2235 aaKnown RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 H3BQ06 376 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 SDC3O75056 442 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 FADS2O95864 444 aaKnown RBP5.93□□□□□ -1.46
SCN1A-217ENST00000637988 SLC10A3P09131 477 aa5.93□□□□□ -1.46
SCN1A-217ENST00000637988 FAM163BP0C2L3 166 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms