RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 SLC13A3Q8WWT9 602 aa19.18■□□□□ 0.66
CLN3-250ENST00000636839 NCSTNQ92542 709 aa19.18■□□□□ 0.66
CLN3-250ENST00000636839 MS4A6EQ96DS6 147 aa19.18■□□□□ 0.66
CLN3-250ENST00000636839 ZBTB18Q99592 522 aa19.18■□□□□ 0.66
CLN3-250ENST00000636839 ARRDC1-AS1Q9H2J1 176 aa19.18■□□□□ 0.66
CLN3-250ENST00000636839 GMPR2Q9P2T1 348 aaKnown RBP19.18■□□□□ 0.66
CLN3-250ENST00000636839 KLHL3Q9UH77 587 aa19.18■□□□□ 0.66
CLN3-250ENST00000636839 GMEB2Q9UKD1 530 aa19.18■□□□□ 0.66
CLN3-250ENST00000636839 PCDHGA2Q9Y5H1 932 aa19.18■□□□□ 0.66
CLN3-250ENST00000636839 H0YHG0 523 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 FXYD1O00168 92 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 CAPN5O15484 640 aaPredicted RBP19.17■□□□□ 0.66
CLN3-250ENST00000636839 B4GAT1O43505 415 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 PGRP06401 933 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 TAS2R50P59544 299 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 RAB8AP61006 207 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 PSME3P61289 254 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 CFHR1Q03591 330 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 AMZ1Q400G9 498 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 TOR1AIP1Q5JTV8 583 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 ZNF793Q6ZN11 406 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 ANKRD46Q86W74 232 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 PUM2Q8TB72 1066 aaKnown RBP eCLIP19.17■□□□□ 0.66
CLN3-250ENST00000636839 C16orf78Q8WTQ4 265 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 ZUFSPQ96AP4 578 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 METTL2AQ96IZ6 378 aaKnown RBP19.17■□□□□ 0.66
CLN3-250ENST00000636839 TGM7Q96PF1 710 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 GTPBP2Q9BX10 602 aaKnown RBP19.17■□□□□ 0.66
CLN3-250ENST00000636839 LDHAL6BQ9BYZ2 381 aaPredicted RBP19.17■□□□□ 0.66
CLN3-250ENST00000636839 SIRT5Q9NXA8 310 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 TMPRSS11DO60235 418 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 CDH3P22223 829 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 SERPINB1P30740 379 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 RPS15AP62244 130 aaKnown RBP19.17■□□□□ 0.66
CLN3-250ENST00000636839 ELF3P78545 371 aaPredicted RBP19.17■□□□□ 0.66
CLN3-250ENST00000636839 PRSS53Q2L4Q9 553 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 DEFB110Q30KQ9 67 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 USP53Q70EK8 1073 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 PARP9Q8IXQ6 854 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 AVL9Q8NBF6 648 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 TTLQ8NG68 377 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 OR52E6Q96RD3 313 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 STARD5Q9NSY2 213 aa19.17■□□□□ 0.66
CLN3-250ENST00000636839 LY6G6EA0A0G2JKS1 128 aa19.16■□□□□ 0.66
CLN3-250ENST00000636839 GABRR3A8MPY1 467 aa19.16■□□□□ 0.66
CLN3-250ENST00000636839 BBIP1A8MTZ0 92 aa19.16■□□□□ 0.66
CLN3-250ENST00000636839 ERI3O43414 337 aaKnown RBP19.16■□□□□ 0.66
CLN3-250ENST00000636839 SIGLEC6O43699 453 aa19.16■□□□□ 0.66
CLN3-250ENST00000636839 C9P02748 559 aa19.16■□□□□ 0.66
CLN3-250ENST00000636839 EIF2S1P05198 315 aaKnown RBP19.16■□□□□ 0.66
CLN3-250ENST00000636839 LAMP1P11279 417 aa19.16■□□□□ 0.66
CLN3-250ENST00000636839 PIM1P11309 404 aaPredicted RBP19.16■□□□□ 0.66
CLN3-250ENST00000636839 ERFP50548 548 aa19.16■□□□□ 0.66
CLN3-250ENST00000636839 CCNYL2Q5T2Q4 361 aa19.16■□□□□ 0.66
CLN3-250ENST00000636839 OR4F3Q6IEY1 312 aa19.16■□□□□ 0.66
CLN3-250ENST00000636839 FAM180BQ6P0A1 224 aa19.16■□□□□ 0.66
CLN3-250ENST00000636839 C8orf82Q6P1X6 216 aaPredicted RBP19.16■□□□□ 0.66
CLN3-250ENST00000636839 HPS6Q86YV9 775 aa19.16■□□□□ 0.66
CLN3-250ENST00000636839 SCUBE1Q8IWY4 988 aa19.16■□□□□ 0.66
CLN3-250ENST00000636839 PGAM4Q8N0Y7 254 aa19.16■□□□□ 0.66
CLN3-250ENST00000636839 TRPV3Q8NET8 790 aa19.16■□□□□ 0.66
CLN3-250ENST00000636839 TSPEARQ8WU66 669 aa19.16■□□□□ 0.66
CLN3-250ENST00000636839 WDR60Q8WVS4 1066 aa19.16■□□□□ 0.66
CLN3-250ENST00000636839 UCN3Q969E3 161 aa19.16■□□□□ 0.66
CLN3-250ENST00000636839 RGMAQ96B86 450 aa19.16■□□□□ 0.66
CLN3-250ENST00000636839 RAB3IPQ96QF0 476 aaPredicted RBP19.16■□□□□ 0.66
CLN3-250ENST00000636839 SEMA6CQ9H3T2 930 aa19.16■□□□□ 0.66
CLN3-250ENST00000636839 NLGN3Q9NZ94 848 aa19.16■□□□□ 0.66
CLN3-250ENST00000636839 TMEM9Q9P0T7 183 aa19.16■□□□□ 0.66
CLN3-250ENST00000636839 SLC7A8Q9UHI5 535 aa19.16■□□□□ 0.66
CLN3-250ENST00000636839 PADI4Q9UM07 663 aa19.16■□□□□ 0.66
CLN3-250ENST00000636839 SLC6A14Q9UN76 642 aa19.16■□□□□ 0.66
CLN3-250ENST00000636839 KLK4Q9Y5K2 254 aa19.16■□□□□ 0.66
CLN3-250ENST00000636839 U3KQA8 63 aa19.16■□□□□ 0.66
CLN3-250ENST00000636839 H0YGG7 62 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 ARHGAP33O14559 1287 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 NUDT21O43809 227 aaKnown RBP19.15■□□□□ 0.66
CLN3-250ENST00000636839 SEMA3DO95025 777 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 PRPS1L1P21108 318 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 ARF3P61204 181 aaPredicted RBP19.15■□□□□ 0.66
CLN3-250ENST00000636839 ZNF763Q0D2J5 394 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 NFYCQ13952 458 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 ADPRMQ3LIE5 342 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 SLC23A3Q6PIS1 610 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 C16orf89Q6UX73 402 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 ASPGQ86U10 573 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 SHISA5Q8N114 240 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 TBC1D19Q8N5T2 526 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 EID2Q8N6I1 236 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 LRRC58Q96CX6 371 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 SLC6A13Q9NSD5 602 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 TMEM45AQ9NWC5 275 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 MCM8Q9UJA3 840 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 LEF1Q9UJU2 399 aaPredicted RBP19.15■□□□□ 0.66
CLN3-250ENST00000636839 ERVK-11Q9UQG0 969 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 RP1P56715 2156 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 IGHV1OR21-1A0A087WYE8 117 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 COX7A2P14406 83 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 GLB1P16278 677 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 S100A3P33764 101 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms