RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 GPR141Q7Z602 305 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 DSG4Q86SJ6 1040 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 VPS37AQ8NEZ2 397 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 MAGEB10Q96LZ2 347 aaPredicted RBP10.19□□□□□ -0.78
CUX1-221ENST00000622516 F2RL3Q96RI0 385 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 FAF1Q9UNN5 650 aaPredicted RBP10.19□□□□□ -0.78
CUX1-221ENST00000622516 GPR34Q9UPC5 381 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 ZNF451Q9Y4E5 1061 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 C1orf226A1L170 272 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 WASHC1A8K0Z3 465 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 PPM1DO15297 605 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 IL3P08700 152 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 HPCAL1P37235 193 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 GSSP48637 474 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 ALDH9A1P49189 494 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 RGNQ15493 299 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 GPR107Q5VW38 600 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 CPZQ66K79 652 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 WASH2PQ6VEQ5 465 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 R3HCC1LQ7Z5L2 792 aaKnown RBP10.19□□□□□ -0.78
CUX1-221ENST00000622516 ADCK2Q7Z695 626 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 DNAJB8Q8NHS0 232 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 ZFP90Q8TF47 636 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 C16orf78Q8WTQ4 265 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 JPH3Q8WXH2 748 aaPredicted RBP10.19□□□□□ -0.78
CUX1-221ENST00000622516 UCN3Q969E3 161 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 RAD51AP1Q96B01 352 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 DPEP2Q9H4A9 486 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 GDE1Q9NZC3 331 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 TMEFF2Q9UIK5 374 aaPredicted RBP10.19□□□□□ -0.78
CUX1-221ENST00000622516 SAMD4AQ9UPU9 718 aaKnown RBP10.19□□□□□ -0.78
CUX1-221ENST00000622516 SNX8Q9Y5X2 465 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 SNRNP200O75643 2136 aaKnown RBP10.19□□□□□ -0.78
CUX1-221ENST00000622516 ATG2AQ2TAZ0 1938 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 OR52A4PA6NMU1 304 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 VEGFDO43915 354 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 BMP10O95393 424 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 C7P10643 843 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 PTGER1P34995 402 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 MAGEA10P43363 369 aaPredicted RBP10.18□□□□□ -0.78
CUX1-221ENST00000622516 ASMTP46597 345 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 RPS26P62854 115 aaKnown RBP10.18□□□□□ -0.78
CUX1-221ENST00000622516 PAGE2BQ5JRK9 111 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 CCNYL2Q5T2Q4 361 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 PPP2R2DQ66LE6 453 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 PDZD3Q86UT5 571 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 FAM124AQ86V42 546 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 LRRTM4Q86VH4 590 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 DCP2Q8IU60 420 aaKnown RBP10.18□□□□□ -0.78
CUX1-221ENST00000622516 CPA6Q8N4T0 437 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 CNIH3Q8TBE1 160 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 COX14Q96I36 57 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 ZNF514Q96K75 400 aaPredicted RBP10.18□□□□□ -0.78
CUX1-221ENST00000622516 LINC00615Q96LM1 132 aaPredicted RBP10.18□□□□□ -0.78
CUX1-221ENST00000622516 RBM4BQ9BQ04 359 aaKnown RBP10.18□□□□□ -0.78
CUX1-221ENST00000622516 SLC35A5Q9BS91 424 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 EFCAB11Q9BUY7 163 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 RBM4Q9BWF3 364 aaKnown RBP10.18□□□□□ -0.78
CUX1-221ENST00000622516 HDAC8Q9BY41 377 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 RIBC2Q9H4K1 309 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 VCX3AQ9NNX9 186 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 ITM2CQ9NQX7 267 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 IMP3Q9NV31 184 aaKnown RBP10.18□□□□□ -0.78
CUX1-221ENST00000622516 C17orf113A0A1B0GUU1 675 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 H0YAE9 185 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 PRMT3O60678 531 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 TRMUO75648 421 aaKnown RBP10.18□□□□□ -0.78
CUX1-221ENST00000622516 TBX6O95947 436 aaPredicted RBP10.18□□□□□ -0.78
CUX1-221ENST00000622516 HSD3B1P14060 373 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 HSD3B2P26439 372 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 SOAT1P35610 550 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 GALK1P51570 392 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 TUBA4AP68366 448 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 DLX2Q07687 328 aaPredicted RBP10.18□□□□□ -0.78
CUX1-221ENST00000622516 FCHO2Q0JRZ9 810 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 RAB39AQ14964 217 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 IRF4Q15306 451 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 ZNF765Q7L2R6 523 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 THAP5Q7Z6K1 395 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 LAS2Q8IYD9 372 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 C8orf59Q8N0T1 100 aaPredicted RBP10.18□□□□□ -0.78
CUX1-221ENST00000622516 ANKRD53Q8N9V6 530 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 ZNF555Q8NEP9 628 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 OR52J3Q8NH60 311 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 OR5K1Q8NHB7 308 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 OR14C36Q8NHC7 312 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 SNRNP27Q8WVK2 155 aaKnown RBP10.18□□□□□ -0.78
CUX1-221ENST00000622516 UBE2FQ969M7 185 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 PPCDCQ96CD2 204 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 COQ8BQ96D53 544 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 REPS1Q96D71 796 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 SLC6A16Q9GZN6 736 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 OCEL1Q9H607 264 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 REEP4Q9H6H4 257 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 CXorf21Q9HAI6 301 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 IL1RAPQ9NPH3 570 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 WDR70Q9NW82 654 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 PTTG2Q9NZH5 202 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 PDP1Q9P0J1 537 aaPredicted RBP10.18□□□□□ -0.78
CUX1-221ENST00000622516 CDH7Q9ULB5 785 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms