RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 MDS2Q8NDY4 140 aa11.21□□□□□ -0.61
UPF3B-204ENST00000619445 PEX11GQ96HA9 241 aa11.21□□□□□ -0.61
UPF3B-204ENST00000619445 MAGED4Q96JG8 741 aa11.21□□□□□ -0.61
UPF3B-204ENST00000619445 CAPS2Q9BXY5 557 aa11.21□□□□□ -0.61
UPF3B-204ENST00000619445 PITHD1Q9GZP4 211 aaPredicted RBP11.21□□□□□ -0.61
UPF3B-204ENST00000619445 LANCL2Q9NS86 450 aa11.21□□□□□ -0.61
UPF3B-204ENST00000619445 ZFATQ9P243 1243 aa11.21□□□□□ -0.61
UPF3B-204ENST00000619445 IGHV3-20A0A0C4DH32 117 aa11.2□□□□□ -0.62
UPF3B-204ENST00000619445 ASPDHA6ND91 283 aa11.2□□□□□ -0.62
UPF3B-204ENST00000619445 CHST10O43529 356 aa11.2□□□□□ -0.62
UPF3B-204ENST00000619445 PRMT3O60678 531 aa11.2□□□□□ -0.62
UPF3B-204ENST00000619445 SLC19A2O60779 497 aa11.2□□□□□ -0.62
UPF3B-204ENST00000619445 F10P00742 488 aa11.2□□□□□ -0.62
UPF3B-204ENST00000619445 STATHP02808 62 aa11.2□□□□□ -0.62
UPF3B-204ENST00000619445 SERPINA6P08185 405 aa11.2□□□□□ -0.62
UPF3B-204ENST00000619445 F7P08709 466 aaPredicted RBP11.2□□□□□ -0.62
UPF3B-204ENST00000619445 EFNA3P52797 238 aa11.2□□□□□ -0.62
UPF3B-204ENST00000619445 SLC26A5P58743 744 aa11.2□□□□□ -0.62
UPF3B-204ENST00000619445 STXBP1P61764 594 aaKnown RBP11.2□□□□□ -0.62
UPF3B-204ENST00000619445 ALDH6A1Q02252 535 aaKnown RBP11.2□□□□□ -0.62
UPF3B-204ENST00000619445 OC90Q02509 493 aaPredicted RBP11.2□□□□□ -0.62
UPF3B-204ENST00000619445 TERF2Q15554 542 aa11.2□□□□□ -0.62
UPF3B-204ENST00000619445 OR1C1Q15619 314 aa11.2□□□□□ -0.62
UPF3B-204ENST00000619445 DEFB134Q4QY38 66 aa11.2□□□□□ -0.62
UPF3B-204ENST00000619445 STEAP4Q687X5 459 aa11.2□□□□□ -0.62
UPF3B-204ENST00000619445 BNC2Q6ZN30 1099 aaPredicted RBP11.2□□□□□ -0.62
UPF3B-204ENST00000619445 ADAMTSL2Q86TH1 951 aa11.2□□□□□ -0.62
UPF3B-204ENST00000619445 RPS19BP1Q86WX3 136 aaKnown RBP11.2□□□□□ -0.62
UPF3B-204ENST00000619445 CRLF3Q8IUI8 442 aa11.2□□□□□ -0.62
UPF3B-204ENST00000619445 POGLUT1Q8NBL1 392 aa11.2□□□□□ -0.62
UPF3B-204ENST00000619445 ADAMTS18Q8TE60 1221 aa11.2□□□□□ -0.62
UPF3B-204ENST00000619445 NEIL2Q969S2 332 aa11.2□□□□□ -0.62
UPF3B-204ENST00000619445 TMEM125Q96AQ2 219 aa11.2□□□□□ -0.62
UPF3B-204ENST00000619445 PYCR2Q96C36 320 aa11.2□□□□□ -0.62
UPF3B-204ENST00000619445 SCMH1Q96GD3 660 aa11.2□□□□□ -0.62
UPF3B-204ENST00000619445 MACROD1Q9BQ69 325 aa11.2□□□□□ -0.62
UPF3B-204ENST00000619445 DDX47Q9H0S4 455 aaKnown RBP11.2□□□□□ -0.62
UPF3B-204ENST00000619445 SH2B3Q9UQQ2 575 aa11.2□□□□□ -0.62
UPF3B-204ENST00000619445 GABRR3A8MPY1 467 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 CCDC188H7C350 402 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 FCHO1O14526 889 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 H2AFYO75367 372 aaKnown RBP11.19□□□□□ -0.62
UPF3B-204ENST00000619445 CDC123O75794 336 aaPredicted RBP11.19□□□□□ -0.62
UPF3B-204ENST00000619445 GUCA1CO95843 209 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 SERPIND1P05546 499 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 ESRRAP11474 423 aaPredicted RBP11.19□□□□□ -0.62
UPF3B-204ENST00000619445 ZNF37AP17032 561 aaPredicted RBP11.19□□□□□ -0.62
UPF3B-204ENST00000619445 GNAZP19086 355 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 MST1P26927 711 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 TNFRSF8P28908 595 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 CD96P40200 585 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 ELK3P41970 407 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 CYB561P49447 251 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 REEP5Q00765 189 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 DR1Q01658 176 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 MGAT5Q09328 741 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 RCN2Q14257 317 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 KCTD19Q17RG1 926 aaPredicted RBP11.19□□□□□ -0.62
UPF3B-204ENST00000619445 MSS51Q4VC12 460 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 SBSNQ6UWP8 590 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 MRGPRGQ86SM5 289 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 C7orf57Q8NEG2 295 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 ELP5Q8TE02 316 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 ITLN2Q8WWU7 325 aaPredicted RBP11.19□□□□□ -0.62
UPF3B-204ENST00000619445 CCDC120Q96HB5 630 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 GPR137Q96N19 417 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 PTCHD1Q96NR3 888 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 OR4K3Q96R72 315 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 OLFM1Q99784 485 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 SLC6A16Q9GZN6 736 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 POPDC3Q9HBV1 291 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 PRDM9Q9NQV7 894 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 LRFN1Q9P244 771 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 RNF14Q9UBS8 474 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 MMACHCQ9Y4U1 282 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 TEX264Q9Y6I9 313 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 CACNA1CQ13936 2221 aa11.19□□□□□ -0.62
UPF3B-204ENST00000619445 ZNF860A6NHJ4 632 aa11.18□□□□□ -0.62
UPF3B-204ENST00000619445 SAGE2PA6NJ88 616 aa11.18□□□□□ -0.62
UPF3B-204ENST00000619445 SP1P08047 785 aa11.18□□□□□ -0.62
UPF3B-204ENST00000619445 ZNF888P0CJ79 500 aaPredicted RBP11.18□□□□□ -0.62
UPF3B-204ENST00000619445 IVDP26440 423 aa11.18□□□□□ -0.62
UPF3B-204ENST00000619445 TRHRP34981 398 aaPredicted RBP11.18□□□□□ -0.62
UPF3B-204ENST00000619445 SLC12A2P55011 1212 aa11.18□□□□□ -0.62
UPF3B-204ENST00000619445 SRSF11Q05519 484 aaKnown RBP11.18□□□□□ -0.62
UPF3B-204ENST00000619445 PPP1R3AQ16821 1122 aa11.18□□□□□ -0.62
UPF3B-204ENST00000619445 CDKL4Q5MAI5 379 aa11.18□□□□□ -0.62
UPF3B-204ENST00000619445 SLC25A25Q6KCM7 469 aa11.18□□□□□ -0.62
UPF3B-204ENST00000619445 NXPE4Q6UWF7 544 aa11.18□□□□□ -0.62
UPF3B-204ENST00000619445 Q6ZPB1 254 aaPredicted RBP11.18□□□□□ -0.62
UPF3B-204ENST00000619445 FRA10AC1Q70Z53 315 aa11.18□□□□□ -0.62
UPF3B-204ENST00000619445 THOC6Q86W42 341 aaKnown RBP11.18□□□□□ -0.62
UPF3B-204ENST00000619445 ARMC10Q8N2F6 343 aa11.18□□□□□ -0.62
UPF3B-204ENST00000619445 GHDCQ8N2G8 530 aa11.18□□□□□ -0.62
UPF3B-204ENST00000619445 TCAIMQ8N3R3 496 aa11.18□□□□□ -0.62
UPF3B-204ENST00000619445 BBOF1Q8ND07 529 aa11.18□□□□□ -0.62
UPF3B-204ENST00000619445 OR5T3Q8NGG3 340 aa11.18□□□□□ -0.62
UPF3B-204ENST00000619445 UTP15Q8TED0 518 aaKnown RBP11.18□□□□□ -0.62
UPF3B-204ENST00000619445 CFAP36Q96G28 342 aa11.18□□□□□ -0.62
UPF3B-204ENST00000619445 FAR2Q96K12 515 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms