RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 PROX1Q92786 737 aa13.95□□□□□ -0.18
SHROOM1-208ENST00000617339 CFHR5Q9BXR6 569 aa13.95□□□□□ -0.18
SHROOM1-208ENST00000617339 LOC100130705A0A1B0GUX0 176 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 TNFRSF10AO00220 468 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 RTCAO00442 366 aaKnown RBP13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 DYRK3O43781 588 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 MATN4O95460 622 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 PAK4O96013 591 aaPredicted RBP13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 SERPINA1P01009 418 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 EPORP19235 508 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 ALDH9A1P49189 494 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 SLC14A1Q13336 389 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 E2F2Q14209 437 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 CITED4Q96RK1 184 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 ZBTB20Q9HC78 741 aaPredicted RBP13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 C5AR2Q9P296 337 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 OR1A2Q9Y585 309 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 VPS13AQ96RL7 3174 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 SEC16AO15027 2179 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 UPK1AO00322 258 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 SLC22A1O15245 554 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 HOXC11O43248 304 aaPredicted RBP13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 EEDO75530 441 aaKnown RBP13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 VIPR1P32241 457 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 PPP5CP53041 499 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 FRG2Q64ET8 278 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 LIPIQ6XZB0 460 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 RFPL4BQ6ZWI9 263 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 GALNT13Q8IUC8 556 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 CELF5Q8N6W0 485 aaKnown RBP13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 NETO1Q8TDF5 533 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 FRG2BQ96QU4 278 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 SLC25A37Q9NYZ2 338 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 SNX8Q9Y5X2 465 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 DOCK9Q9BZ29 2069 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 KLK8O60259 260 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 MT-ND2P03891 347 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 DNTTP04053 509 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 LCKP06239 509 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 ACADMP11310 421 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 RAPSNQ13702 412 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 FAM78AQ5JUQ0 283 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 LAIR2Q6ISS4 152 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 LEMD2Q8NC56 503 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 ASB11Q8WXH4 323 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 GTF2H4Q92759 462 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 DEPDC7Q96QD5 511 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 TTYH2Q9BSA4 534 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 PBX4Q9BYU1 374 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 PLSCR3Q9NRY6 295 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 SNX6Q9UNH7 406 aa13.94□□□□□ -0.18
SHROOM1-208ENST00000617339 WNT9AO14904 365 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 UPK1BO75841 260 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 ETHE1O95571 254 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 EIF2S1P05198 315 aaKnown RBP13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 NUDT7P0C024 238 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 VTCN1Q7Z7D3 282 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 PLA2G15Q8NCC3 412 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 ZNF540Q8NDQ6 660 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 GLYATL1Q969I3 302 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 LGALS12Q96DT0 336 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 OTUB1Q96FW1 271 aaPredicted RBP13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 VMP1Q96GC9 406 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 CEP295NLQ96MC4 621 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 ZNF583Q96ND8 569 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 FZD3Q9NPG1 666 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 IMP3Q9NV31 184 aaKnown RBP13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 C14orf119Q9NWQ9 140 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 ZIM2Q9NZV7 527 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 ANAPC1Q9H1A4 1944 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 MGAT4DA6NG13 374 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 SLC28A1O00337 649 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 AP3D1O14617 1153 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 ANXA6P08133 673 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 CD36P16671 472 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 EIF2DP41214 584 aaKnown RBP13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 ZNF805Q5CZA5 627 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 RHOXF1Q8NHV9 184 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 TXNDC15Q96J42 360 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 CRISPLD2Q9H0B8 497 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 ZNF221Q9UK13 617 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 BTBD3Q9Y2F9 522 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 ZNF451Q9Y4E5 1061 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 TESMINQ9Y4I5 508 aa13.93□□□□□ -0.18
SHROOM1-208ENST00000617339 EFCAB9A8MZ26 197 aa13.92□□□□□ -0.18
SHROOM1-208ENST00000617339 BCKDKO14874 412 aa13.92□□□□□ -0.18
SHROOM1-208ENST00000617339 KIAA0355O15063 1070 aa13.92□□□□□ -0.18
SHROOM1-208ENST00000617339 POP7O75817 140 aaKnown RBP13.92□□□□□ -0.18
SHROOM1-208ENST00000617339 GABARAPO95166 117 aa13.92□□□□□ -0.18
SHROOM1-208ENST00000617339 UMPSP11172 480 aa13.92□□□□□ -0.18
SHROOM1-208ENST00000617339 LAMP1P11279 417 aa13.92□□□□□ -0.18
SHROOM1-208ENST00000617339 SDC1P18827 310 aa13.92□□□□□ -0.18
SHROOM1-208ENST00000617339 SOAT1P35610 550 aa13.92□□□□□ -0.18
SHROOM1-208ENST00000617339 RPS13P62277 151 aaKnown RBP13.92□□□□□ -0.18
SHROOM1-208ENST00000617339 PWP1Q13610 501 aa13.92□□□□□ -0.18
SHROOM1-208ENST00000617339 NKG7Q16617 165 aa13.92□□□□□ -0.18
SHROOM1-208ENST00000617339 MPP7Q5T2T1 576 aa13.92□□□□□ -0.18
SHROOM1-208ENST00000617339 MMP21Q8N119 569 aa13.92□□□□□ -0.18
SHROOM1-208ENST00000617339 VN1R2Q8NFZ6 395 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms