RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 PLD2O14939 933 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 POLR1CO15160 346 aaPredicted RBP13.66□□□□□ -0.22
UPF1-211ENST00000600868 VPS4BO75351 444 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 SMIM10L1P0DMW3 83 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 CCL4P13236 92 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 DRD4P21917 467 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 GCGRP47871 477 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 RAB15P59190 212 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 HMGCS1Q01581 520 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 TGM3Q08188 693 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 PUM1Q14671 1186 aaKnown RBP eCLIP13.66□□□□□ -0.22
UPF1-211ENST00000600868 NDUFA9Q16795 377 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 FAM214AQ32MH5 1076 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.66□□□□□ -0.22
UPF1-211ENST00000600868 TOR1AIP1Q5JTV8 583 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 CGB2Q6NT52 195 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 EPGNQ6UW88 154 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 ABHD13Q7L211 337 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 PPP1R3BQ86XI6 285 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 OR2L5Q8NG80 312 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 OR2T11Q8NH01 316 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 UTP15Q8TED0 518 aaKnown RBP13.66□□□□□ -0.22
UPF1-211ENST00000600868 CHTF18Q8WVB6 975 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 GAL3ST3Q96A11 431 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 SMIM10Q96HG1 83 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 F2RL3Q96RI0 385 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 NSRP1Q9H0G5 558 aaKnown RBP13.66□□□□□ -0.22
UPF1-211ENST00000600868 KLHL31Q9H511 634 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 NPHS2Q9NP85 383 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 STARD5Q9NSY2 213 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 IRAK4Q9NWZ3 460 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 SLC39A1Q9NY26 324 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 AHSPQ9NZD4 102 aa13.66□□□□□ -0.22
UPF1-211ENST00000600868 AGRPO00253 132 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 LSM1O15116 133 aaKnown RBP13.65□□□□□ -0.22
UPF1-211ENST00000600868 ERI3O43414 337 aaKnown RBP13.65□□□□□ -0.22
UPF1-211ENST00000600868 HYAL3O43820 417 aaPredicted RBP13.65□□□□□ -0.22
UPF1-211ENST00000600868 SH3BGRLO75368 114 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 JMJD7P0C870 316 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 ARSFP54793 590 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 AQP5P55064 265 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 TBL3Q12788 808 aaKnown RBP13.65□□□□□ -0.22
UPF1-211ENST00000600868 FAM53BQ14153 422 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 NR6A1Q15406 480 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 MUM1Q2TAK8 710 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 VWA5B1Q5TIE3 1220 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 TRIM40Q6P9F5 258 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 ABHD17CQ6PCB6 329 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 CEACAM20Q6UY09 585 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 LARP4Q71RC2 724 aaKnown RBP eCLIP13.65□□□□□ -0.22
UPF1-211ENST00000600868 UBE3DQ7Z6J8 389 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 CPLX4Q7Z7G2 160 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 METTL4Q8N3J2 472 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 RFWD2Q8NHY2 731 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 ACTRT2Q8TDY3 377 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 RGMAQ96B86 450 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 MAELQ96JY0 434 aaKnown RBP13.65□□□□□ -0.22
UPF1-211ENST00000600868 PPP1R36Q96LQ0 422 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 PPP3R2Q96LZ3 170 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 KCNC2Q96PR1 638 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 TAAR9Q96RI9 348 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 KCNK13Q9HB14 408 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 APMAPQ9HDC9 416 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 C1orf109Q9NX04 203 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 SIRT5Q9NXA8 310 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 KLHL14Q9P2G3 628 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 PCDHB3Q9Y5E6 796 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 PTPRBP23467 1997 aa13.65□□□□□ -0.22
UPF1-211ENST00000600868 KIF26BQ2KJY2 2108 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 ATP6AP2A0A1C7CYW4 349 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 A0A1W2PNU3 283 aaPredicted RBP13.64□□□□□ -0.23
UPF1-211ENST00000600868 FAM149AA5PLN7 773 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 PLPP1O14494 284 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 ZNF749O43361 778 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 DIAPH2O60879 1101 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 ATP6AP2O75787 350 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 PRR35P0CG20 571 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 ZNF888P0CJ79 500 aaPredicted RBP13.64□□□□□ -0.23
UPF1-211ENST00000600868 ALOX12P18054 663 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 ITIH1P19827 911 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 ETV5P41161 510 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 TSFMP43897 325 aaKnown RBP13.64□□□□□ -0.23
UPF1-211ENST00000600868 IDH3AP50213 366 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 RAP1GDS1P52306 607 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 PLA2G16P53816 162 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 HERC3Q15034 1050 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 SMU1Q2TAY7 513 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 AP5B1Q2VPB7 878 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 SLC9B1Q4ZJI4 515 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 SPIN4Q56A73 249 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 SPDYAQ5MJ70 313 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 DCAF12Q5T6F0 453 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 NIPAL1Q6NVV3 410 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 DGLUCYQ7Z3D6 616 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 ZFAND4Q86XD8 727 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 TMEM126BQ8IUX1 230 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 TUBGCP3Q96CW5 907 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 C11orf24Q96F05 449 aaPredicted RBP13.64□□□□□ -0.23
UPF1-211ENST00000600868 THOC1Q96FV9 657 aaKnown RBP13.64□□□□□ -0.23
UPF1-211ENST00000600868 APIPQ96GX9 242 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms