RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 NDUFA9Q16795 377 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 DEFB109BQ30KR1 87 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 UNC50Q53HI1 259 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 SOWAHCQ53LP3 525 aaPredicted RBP18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 SHISA6Q6ZSJ9 500 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 MRGPREQ86SM8 312 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 KRT78Q8N1N4 520 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 ZNF473Q8WTR7 871 aaKnown RBP18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 MS4A6EQ96DS6 147 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 WBP1Q96G27 269 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 TMEM237Q96Q45 408 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 UBL7Q96S82 380 aaPredicted RBP18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 SEMA4CQ9C0C4 833 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 SOX17Q9H6I2 414 aaPredicted RBP18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 IPPKQ9H8X2 491 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 ACSS2Q9NR19 701 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 ZNF282Q9UDV7 671 aaPredicted RBP18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 DCDC2Q9UHG0 476 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 GPN3Q9UHW5 284 aaPredicted RBP18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 PADI2Q9Y2J8 665 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 NAALAD2Q9Y3Q0 740 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 TSC22D4Q9Y3Q8 395 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 SCN2AQ99250 2005 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 SOCS6O14544 535 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 ATXN7O15265 892 aaPredicted RBP18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 SMIM24O75264 130 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 GLRA3O75311 464 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 H2AFYO75367 372 aaKnown RBP18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 RDH16O75452 317 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 BMP10O95393 424 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 CD63P08962 238 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 ALOX12P18054 663 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 KRT15P19012 456 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 KRT4P19013 534 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 FOLR3P41439 243 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 LAPTM5Q13571 262 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 TNFAIP8L3Q5GJ75 292 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 ZNF678Q5SXM1 525 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 LIPJQ5W064 366 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 CPZQ66K79 652 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 BORAQ6PGQ7 559 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 UBE3DQ7Z6J8 389 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 APLFQ8IW19 511 aaPredicted RBP18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 C4orf33Q8N1A6 199 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 RNF175Q8N4F7 328 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 TBC1D19Q8N5T2 526 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 TTLQ8NG68 377 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 OR7G3Q8NG95 312 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 OR5T3Q8NGG3 340 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 WDR20Q8TBZ3 569 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 THAP4Q8WY91 577 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 QRFPRQ96P65 431 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 NTMT1Q9BV86 223 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 TRIM55Q9BYV6 548 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 NOL11Q9H8H0 719 aaKnown RBP18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 POLHQ9Y253 713 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 RNF11Q9Y3C5 154 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 HS3ST3B1Q9Y662 390 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 DOCK10Q96BY6 2186 aa18.46■□□□□ 0.55
SHKBP1-221ENST00000599833 TLDC2A0PJX2 215 aa18.45■□□□□ 0.54
SHKBP1-221ENST00000599833 ZNF860A6NHJ4 632 aa18.45■□□□□ 0.54
SHKBP1-221ENST00000599833 PLIN3O60664 434 aa18.45■□□□□ 0.54
SHKBP1-221ENST00000599833 UGDHO60701 494 aa18.45■□□□□ 0.54
SHKBP1-221ENST00000599833 JRKO75564 520 aa18.45■□□□□ 0.54
SHKBP1-221ENST00000599833 CREB1P16220 341 aa18.45■□□□□ 0.54
SHKBP1-221ENST00000599833 MMP11P24347 488 aa18.45■□□□□ 0.54
SHKBP1-221ENST00000599833 ATP5F1P24539 256 aaPredicted RBP18.45■□□□□ 0.54
SHKBP1-221ENST00000599833 PRKAA2P54646 552 aa18.45■□□□□ 0.54
SHKBP1-221ENST00000599833 RGS1Q08116 209 aa18.45■□□□□ 0.54
SHKBP1-221ENST00000599833 ATP1A4Q13733 1029 aa18.45■□□□□ 0.54
SHKBP1-221ENST00000599833 HERC3Q15034 1050 aa18.45■□□□□ 0.54
SHKBP1-221ENST00000599833 DEFB134Q4QY38 66 aa18.45■□□□□ 0.54
SHKBP1-221ENST00000599833 TOR1AIP1Q5JTV8 583 aa18.45■□□□□ 0.54
SHKBP1-221ENST00000599833 BANPQ8N9N5 519 aa18.45■□□□□ 0.54
SHKBP1-221ENST00000599833 CDK15Q96Q40 435 aa18.45■□□□□ 0.54
SHKBP1-221ENST00000599833 MS4A8Q9BY19 250 aa18.45■□□□□ 0.54
SHKBP1-221ENST00000599833 ANKHQ9HCJ1 492 aa18.45■□□□□ 0.54
SHKBP1-221ENST00000599833 MKKSQ9NPJ1 570 aaPredicted RBP18.45■□□□□ 0.54
SHKBP1-221ENST00000599833 HCN3Q9P1Z3 774 aa18.45■□□□□ 0.54
SHKBP1-221ENST00000599833 TRPC4Q9UBN4 977 aa18.45■□□□□ 0.54
SHKBP1-221ENST00000599833 NXT1Q9UKK6 140 aaKnown RBP18.45■□□□□ 0.54
SHKBP1-221ENST00000599833 A0A1W2PQ72 361 aa18.44■□□□□ 0.54
SHKBP1-221ENST00000599833 H0YIV9 168 aa18.44■□□□□ 0.54
SHKBP1-221ENST00000599833 SERPIND1P05546 499 aa18.44■□□□□ 0.54
SHKBP1-221ENST00000599833 FAM87AP0C7U9 286 aa18.44■□□□□ 0.54
SHKBP1-221ENST00000599833 HNF4AP41235 474 aa18.44■□□□□ 0.54
SHKBP1-221ENST00000599833 AVPR1BP47901 424 aa18.44■□□□□ 0.54
SHKBP1-221ENST00000599833 RAB8AP61006 207 aa18.44■□□□□ 0.54
SHKBP1-221ENST00000599833 HERVK_113P63132 956 aa18.44■□□□□ 0.54
SHKBP1-221ENST00000599833 PAGE2BQ5JRK9 111 aa18.44■□□□□ 0.54
SHKBP1-221ENST00000599833 BEND6Q5SZJ8 279 aaPredicted RBP18.44■□□□□ 0.54
SHKBP1-221ENST00000599833 MED27Q6P2C8 311 aa18.44■□□□□ 0.54
SHKBP1-221ENST00000599833 LSM14AQ8ND56 463 aaKnown RBP18.44■□□□□ 0.54
SHKBP1-221ENST00000599833 OR51Q1Q8NH59 317 aa18.44■□□□□ 0.54
SHKBP1-221ENST00000599833 MIEF2Q96C03 454 aa18.44■□□□□ 0.54
SHKBP1-221ENST00000599833 L3HYPDHQ96EM0 354 aa18.44■□□□□ 0.54
SHKBP1-221ENST00000599833 ZIM3Q96PE6 472 aa18.44■□□□□ 0.54
SHKBP1-221ENST00000599833 ERVK-6Q9BXR3 956 aa18.44■□□□□ 0.54
SHKBP1-221ENST00000599833 LANCL2Q9NS86 450 aa18.44■□□□□ 0.54
SHKBP1-221ENST00000599833 COL6A6A6NMZ7 2263 aa18.43■□□□□ 0.54
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