RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 COPG2Q9UBF2 871 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 SLC22A14Q9Y267 594 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 SAR1BQ9Y6B6 198 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 KCNE2Q9Y6J6 123 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 USP9XQ93008 2570 aaPredicted RBP9.22□□□□□ -0.93
VRK3-216ENST00000599342 MAST4O15021 2626 aa9.22□□□□□ -0.93
VRK3-216ENST00000599342 USP9YO00507 2555 aaPredicted RBP9.21□□□□□ -0.93
VRK3-216ENST00000599342 GABRR3A8MPY1 467 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 EFCAB8A8MWE9 144 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 PRSS44E7EML9 344 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 FAM227AF5H4B4 570 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 CDC7O00311 574 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 CHST10O43529 356 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 PRMT3O60678 531 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 CD46P15529 392 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 MST1P26927 711 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 EEF1DP29692 281 aaKnown RBP9.21□□□□□ -0.94
VRK3-216ENST00000599342 HNF4AP41235 474 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 HNMTP50135 292 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 SLC26A5P58743 744 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 RAB8AP61006 207 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 CDKL1Q00532 357 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 ILF2Q12905 390 aaKnown RBP9.21□□□□□ -0.94
VRK3-216ENST00000599342 ZNF460Q14592 562 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 NAA30Q147X3 362 aaPredicted RBP9.21□□□□□ -0.94
VRK3-216ENST00000599342 OR1C1Q15619 314 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 PPP1R3AQ16821 1122 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 MTFR2Q6P444 385 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 NXPE4Q6UWF7 544 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 QSOX2Q6ZRP7 698 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 ADAMTSL2Q86TH1 951 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 ZC3HC1Q86WB0 502 aaKnown RBP9.21□□□□□ -0.94
VRK3-216ENST00000599342 CREG2Q8IUH2 290 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 CYP4X1Q8N118 509 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 LGI4Q8N135 537 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 FBXO36Q8NEA4 188 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 ARMC2Q8NEN0 867 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 UTP15Q8TED0 518 aaKnown RBP9.21□□□□□ -0.94
VRK3-216ENST00000599342 ANKRD7Q92527 254 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 ANP32BQ92688 251 aaKnown RBP9.21□□□□□ -0.94
VRK3-216ENST00000599342 MAGED4Q96JG8 741 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 PTCHD1Q96NR3 888 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 SIGLEC12Q96PQ1 595 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 NAPGQ99747 312 aaPredicted RBP9.21□□□□□ -0.94
VRK3-216ENST00000599342 SPNS1Q9H2V7 528 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 GPAMQ9HCL2 828 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 KLHL1Q9NR64 748 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 TXNDC16Q9P2K2 825 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 CTNNAL1Q9UBT7 734 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 SH3BGRL2Q9UJC5 107 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 IKZF3Q9UKT9 509 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 OARD1Q9Y530 152 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 PCDHGB6Q9Y5F9 930 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 PSAT1Q9Y617 370 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 NAV2Q8IVL1 2488 aa9.21□□□□□ -0.94
VRK3-216ENST00000599342 RP1L1Q8IWN7 2480 aaPredicted RBP9.21□□□□□ -0.94
VRK3-216ENST00000599342 HIVEP3Q5T1R4 2406 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 ARHGAP10A1A4S6 786 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 USP27XA6NNY8 438 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 CCL21O00585 134 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 HNRNPRO43390 633 aaKnown RBP9.2□□□□□ -0.94
VRK3-216ENST00000599342 H2AFYO75367 372 aaKnown RBP9.2□□□□□ -0.94
VRK3-216ENST00000599342 WDR47O94967 919 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 B3GALT4O96024 378 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 SERPINA6P08185 405 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 RNH1P13489 461 aaKnown RBP9.2□□□□□ -0.94
VRK3-216ENST00000599342 GNAZP19086 355 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 CD96P40200 585 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 CA7P43166 264 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 STXBP1P61764 594 aaKnown RBP9.2□□□□□ -0.94
VRK3-216ENST00000599342 ALDH6A1Q02252 535 aaKnown RBP9.2□□□□□ -0.94
VRK3-216ENST00000599342 SRSF11Q05519 484 aaKnown RBP9.2□□□□□ -0.94
VRK3-216ENST00000599342 FASTKD3Q14CZ7 662 aaKnown RBP9.2□□□□□ -0.94
VRK3-216ENST00000599342 TSNQ15631 228 aaKnown RBP9.2□□□□□ -0.94
VRK3-216ENST00000599342 TOR1AIP1Q5JTV8 583 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 SPINK14Q6IE38 97 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 CAPN12Q6ZSI9 719 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 ZBED8Q8IZ13 594 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 ANKRD53Q8N9V6 530 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 BBOF1Q8ND07 529 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 MDS2Q8NDY4 140 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 TTLQ8NG68 377 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 CCT6BQ92526 530 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 CDKL2Q92772 493 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 SCMH1Q96GD3 660 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 FAR2Q96K12 515 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 SLC6A16Q9GZN6 736 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 RHBGQ9H310 441 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 RHOJQ9H4E5 214 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 CDCP1Q9H5V8 836 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 CLK4Q9HAZ1 481 aaKnown RBP9.2□□□□□ -0.94
VRK3-216ENST00000599342 POPDC3Q9HBV1 291 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 PRDM9Q9NQV7 894 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 MOCS1Q9NZB8 636 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 LRFN1Q9P244 771 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 RNF14Q9UBS8 474 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 ENTPD4Q9Y227 616 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 CROCCQ5TZA2 2017 aa9.2□□□□□ -0.94
VRK3-216ENST00000599342 SPTBN1Q01082 2364 aaKnown RBP9.2□□□□□ -0.94
VRK3-216ENST00000599342 NBPF19A0A087WUL8 3843 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms