RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 PKNOX1P55347 436 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 RPS13P62277 151 aaKnown RBP10.03□□□□□ -0.8
LIG1-210ENST00000596332 FOXK2Q01167 660 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 TBL3Q12788 808 aaKnown RBP10.03□□□□□ -0.8
LIG1-210ENST00000596332 RUNX2Q13950 521 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 ABRAXAS2Q15018 415 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 SYT16Q17RD7 645 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 FAM214AQ32MH5 1076 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 NKAIN1Q4KMZ8 207 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 TMEM164Q5U3C3 297 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 FRG2Q64ET8 278 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 GPRIN3Q6ZVF9 776 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 MTERF4Q7Z6M4 381 aaKnown RBP10.03□□□□□ -0.8
LIG1-210ENST00000596332 NUDCD3Q8IVD9 361 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 GPR135Q8IZ08 494 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 NLGN4XQ8N0W4 816 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 KRT78Q8N1N4 520 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 METTL27Q8N6F8 245 aaPredicted RBP10.03□□□□□ -0.8
LIG1-210ENST00000596332 CDYL2Q8N8U2 506 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 ANKRD42Q8N9B4 389 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 NLGN4YQ8NFZ3 816 aaPredicted RBP10.03□□□□□ -0.8
LIG1-210ENST00000596332 OR9A4Q8NGU2 314 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 CT55Q8WUE5 264 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 FRG2BQ96QU4 278 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 MTERF1Q99551 399 aaKnown RBP10.03□□□□□ -0.8
LIG1-210ENST00000596332 MESP1Q9BRJ9 268 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 IQCGQ9H095 443 aaKnown RBP10.03□□□□□ -0.8
LIG1-210ENST00000596332 STMN4Q9H169 189 aaPredicted RBP10.03□□□□□ -0.8
LIG1-210ENST00000596332 OR51B5Q9H339 312 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 FANCEQ9HB96 536 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 DMRT3Q9NQL9 472 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 PADI1Q9ULC6 663 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 RAXQ9Y2V3 346 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 PCDHGA11Q9Y5H2 935 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 CLDN16Q9Y5I7 305 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 DNAJC15Q9Y5T4 150 aa10.03□□□□□ -0.8
LIG1-210ENST00000596332 SEC16AO15027 2179 aa10.02□□□□□ -0.8
LIG1-210ENST00000596332 ANKDD1BA6NHY2 528 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 GOLGA6L10A6NI86 522 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 SGK494L7N484 410 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 RTCAO00442 366 aaKnown RBP10.02□□□□□ -0.81
LIG1-210ENST00000596332 PLPP1O14494 284 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 DYNC1I1O14576 645 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 MAP3K7O43318 606 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 SH3BGRLO75368 114 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 NSA2O95478 260 aaKnown RBP10.02□□□□□ -0.81
LIG1-210ENST00000596332 SERPINE1P05121 402 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 ZNF888P0CJ79 500 aaPredicted RBP10.02□□□□□ -0.81
LIG1-210ENST00000596332 ALOX12P18054 663 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 IL1RNP18510 177 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 ALAS2P22557 587 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 ITPKBP27987 946 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 GSTM2P28161 218 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 BSGP35613 385 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 RAB8AP61006 207 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 NAA20P61599 178 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 MAT1AQ00266 395 aaKnown RBP10.02□□□□□ -0.81
LIG1-210ENST00000596332 ABHD18Q0P651 414 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 BST1Q10588 318 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 RCN2Q14257 317 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 CHI3L2Q15782 390 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 RBBP7Q16576 425 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 MUM1Q2TAK8 710 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 PAGE2BQ5JRK9 111 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 TOR1AIP1Q5JTV8 583 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 KHDRBS2Q5VWX1 349 aaKnown RBP10.02□□□□□ -0.81
LIG1-210ENST00000596332 KANK2Q63ZY3 851 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 CLEC6AQ6EIG7 209 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 CYB5D1Q6P9G0 228 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 Q6ZSR9 355 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 MED25Q71SY5 747 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 OVCH1Q7RTY7 1134 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 CUZD1Q86UP6 607 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 LAPTM4BQ86VI4 370 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 CACNA2D3Q8IZS8 1091 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 AMER2Q8N7J2 671 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 TTLQ8NG68 377 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 OR2L5Q8NG80 312 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 OR5T3Q8NGG3 340 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 METTL6Q8TCB7 284 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 PROKR1Q8TCW9 393 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 PPP4R1Q8TF05 950 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 ATP6V1E2Q96A05 226 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 RERGQ96A58 199 aaPredicted RBP10.02□□□□□ -0.81
LIG1-210ENST00000596332 CLIP3Q96DZ5 547 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 HBEGFQ99075 208 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 SPSB2Q99619 263 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 NDC1Q9BTX1 674 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 TRMOQ9BU70 441 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 SORBS1Q9BX66 1292 aaKnown RBP10.02□□□□□ -0.81
LIG1-210ENST00000596332 SLC26A1Q9H2B4 701 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 MID1IP1Q9NPA3 183 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 KCMF1Q9P0J7 381 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 MID2Q9UJV3 735 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 SRPK3Q9UPE1 567 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 NAALAD2Q9Y3Q0 740 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 PCDHGA6Q9Y5G7 932 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 PTGDR2Q9Y5Y4 395 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 MRPS18BQ9Y676 258 aaKnown RBP10.02□□□□□ -0.81
LIG1-210ENST00000596332 MAU2Q9Y6X3 613 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms