RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 SGK494L7N484 410 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 PCDH17O14917 1159 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 GALR3O60755 368 aaPredicted RBP11.27□□□□□ -0.61
LIG3-213ENST00000590630 SIX3O95343 332 aaPredicted RBP11.27□□□□□ -0.61
LIG3-213ENST00000590630 CYC1P08574 325 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 ZNF888P0CJ79 500 aaPredicted RBP11.27□□□□□ -0.61
LIG3-213ENST00000590630 TAC1P20366 129 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 IL10P22301 178 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 EEF1DP29692 281 aaKnown RBP11.27□□□□□ -0.61
LIG3-213ENST00000590630 SERPINB1P30740 379 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 HNF4AP41235 474 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 FOXL2P58012 376 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 SNRPNP63162 240 aaKnown RBP11.27□□□□□ -0.61
LIG3-213ENST00000590630 IFFO1Q0D2I5 559 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 HYAL2Q12891 473 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 KCNAB2Q13303 367 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 ATP1A4Q13733 1029 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 GTF2H2Q13888 395 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 LY6DQ14210 128 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 DEFB134Q4QY38 66 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 VWA2Q5GFL6 755 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 LIPJQ5W064 366 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 GRHL2Q6ISB3 625 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 GTF2H2CQ6P1K8 395 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 SHISA6Q6ZSJ9 500 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 GOLGA7Q7Z5G4 137 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 PPP1R32Q7Z5V6 425 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 PDSS2Q86YH6 399 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 LAS2Q8IYD9 372 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 EXD3Q8N9H8 876 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 OR51Q1Q8NH59 317 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 UTP15Q8TED0 518 aaKnown RBP11.27□□□□□ -0.61
LIG3-213ENST00000590630 GAL3ST3Q96A11 431 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 VPS50Q96JG6 964 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 FER1L6-AS2Q96M78 137 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 IPPKQ9H8X2 491 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 ACTR8Q9H981 624 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 CLK4Q9HAZ1 481 aaKnown RBP11.27□□□□□ -0.61
LIG3-213ENST00000590630 TMEM216Q9P0N5 145 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 C3orf18Q9UK00 162 aa11.27□□□□□ -0.61
LIG3-213ENST00000590630 ZNF490Q9ULM2 529 aaPredicted RBP11.27□□□□□ -0.61
LIG3-213ENST00000590630 A0A088AWK7 358 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 A0A1W2PPM1 405 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 LRIT2A6NDA9 550 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 LRRC14BA6NHZ5 514 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 ARGFXA6NJG6 315 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 A8MT66 165 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 IDSB3KWA1 339 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 MKRN2OSH3BPM6 223 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 AGPSO00116 658 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 FFAR3O14843 346 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 GPR42O15529 346 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 GLRA3O75311 464 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 RDH16O75452 317 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 BMP10O95393 424 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 SBK3P0C264 359 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 SMIM10L1P0DMW3 83 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 ZNF10P21506 573 aaPredicted RBP11.26□□□□□ -0.61
LIG3-213ENST00000590630 XCR1P46094 333 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 MAT1AQ00266 395 aaKnown RBP11.26□□□□□ -0.61
LIG3-213ENST00000590630 RBBP7Q16576 425 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 SYT16Q17RD7 645 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 ADPRMQ3LIE5 342 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 TOR1AIP1Q5JTV8 583 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 MED27Q6P2C8 311 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 SH2D5Q6ZV89 423 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 VN1R5Q7Z5H4 357 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 ZC3H7AQ8IWR0 971 aaKnown RBP11.26□□□□□ -0.61
LIG3-213ENST00000590630 PRSS58Q8IYP2 241 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 CYP4X1Q8N118 509 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 CLEC1AQ8NC01 280 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 CCT6BQ92526 530 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 REPS1Q96D71 796 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 SMIM10Q96HG1 83 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 OR1F2PQ96R84 312 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 C1QTNF3Q9BXJ4 246 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 ROPN1BQ9BZX4 212 aaPredicted RBP11.26□□□□□ -0.61
LIG3-213ENST00000590630 ROPN1Q9HAT0 212 aaPredicted RBP11.26□□□□□ -0.61
LIG3-213ENST00000590630 ACSS2Q9NR19 701 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 P4HTMQ9NXG6 502 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 HCN3Q9P1Z3 774 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 ADGRE2Q9UHX3 823 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 PCTPQ9UKL6 214 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 TSC22D4Q9Y3Q8 395 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 PCDHGA11Q9Y5H2 935 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 HS3ST3B1Q9Y662 390 aa11.26□□□□□ -0.61
LIG3-213ENST00000590630 ZNF860A6NHJ4 632 aa11.25□□□□□ -0.61
LIG3-213ENST00000590630 H0YIV9 168 aa11.25□□□□□ -0.61
LIG3-213ENST00000590630 SOCS6O14544 535 aa11.25□□□□□ -0.61
LIG3-213ENST00000590630 ERI3O43414 337 aaKnown RBP11.25□□□□□ -0.61
LIG3-213ENST00000590630 HEXBP07686 556 aa11.25□□□□□ -0.61
LIG3-213ENST00000590630 RPS17P08708 135 aaKnown RBP11.25□□□□□ -0.61
LIG3-213ENST00000590630 KRT4P19013 534 aa11.25□□□□□ -0.61
LIG3-213ENST00000590630 ATP5F1P24539 256 aaPredicted RBP11.25□□□□□ -0.61
LIG3-213ENST00000590630 HNRNPH1P31943 449 aaKnown RBP11.25□□□□□ -0.61
LIG3-213ENST00000590630 CCT5P48643 541 aa11.25□□□□□ -0.61
LIG3-213ENST00000590630 EMP2P54851 167 aa11.25□□□□□ -0.61
LIG3-213ENST00000590630 RAB8AP61006 207 aa11.25□□□□□ -0.61
LIG3-213ENST00000590630 HERVK_113P63132 956 aa11.25□□□□□ -0.61
LIG3-213ENST00000590630 TGM3Q08188 693 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms