RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 HIVEP1P15822 2718 aa13.12□□□□□ -0.31
VMP1-209ENST00000588915 TRBC2A0A5B9 178 aa13.12□□□□□ -0.31
VMP1-209ENST00000588915 ADAM10O14672 748 aa13.12□□□□□ -0.31
VMP1-209ENST00000588915 MAN1A2O60476 641 aa13.12□□□□□ -0.31
VMP1-209ENST00000588915 CDH1P12830 882 aa13.12□□□□□ -0.31
VMP1-209ENST00000588915 HLCSP50747 726 aa13.12□□□□□ -0.31
VMP1-209ENST00000588915 MLF1P58340 268 aa13.12□□□□□ -0.31
VMP1-209ENST00000588915 RGS1Q08116 209 aa13.12□□□□□ -0.31
VMP1-209ENST00000588915 CDSNQ15517 529 aa13.12□□□□□ -0.31
VMP1-209ENST00000588915 TRIP13Q15645 432 aaPredicted RBP13.12□□□□□ -0.31
VMP1-209ENST00000588915 ANKRD22Q5VYY1 191 aa13.12□□□□□ -0.31
VMP1-209ENST00000588915 DUPD1Q68J44 220 aa13.12□□□□□ -0.31
VMP1-209ENST00000588915 ABHD13Q7L211 337 aa13.12□□□□□ -0.31
VMP1-209ENST00000588915 CHERPQ8IWX8 916 aaKnown RBP13.12□□□□□ -0.31
VMP1-209ENST00000588915 MYO1HQ8N1T3 1032 aa13.12□□□□□ -0.31
VMP1-209ENST00000588915 ZNF740Q8NDX6 193 aa13.12□□□□□ -0.31
VMP1-209ENST00000588915 EEF1AKMT1Q8WVE0 214 aa13.12□□□□□ -0.31
VMP1-209ENST00000588915 TSLPQ969D9 159 aa13.12□□□□□ -0.31
VMP1-209ENST00000588915 TMEM125Q96AQ2 219 aa13.12□□□□□ -0.31
VMP1-209ENST00000588915 SIGLEC10Q96LC7 697 aa13.12□□□□□ -0.31
VMP1-209ENST00000588915 ATG10Q9H0Y0 220 aa13.12□□□□□ -0.31
VMP1-209ENST00000588915 TSPAN10Q9H1Z9 355 aaPredicted RBP13.12□□□□□ -0.31
VMP1-209ENST00000588915 MCCC2Q9HCC0 563 aa13.12□□□□□ -0.31
VMP1-209ENST00000588915 ITGB1BP2Q9UKP3 347 aa13.12□□□□□ -0.31
VMP1-209ENST00000588915 ADAMTS6Q9UKP5 1117 aa13.12□□□□□ -0.31
VMP1-209ENST00000588915 SH2B3Q9UQQ2 575 aa13.12□□□□□ -0.31
VMP1-209ENST00000588915 CELSR1Q9NYQ6 3014 aa13.11□□□□□ -0.31
VMP1-209ENST00000588915 URADA6NGE7 173 aa13.11□□□□□ -0.31
VMP1-209ENST00000588915 FANCGO15287 622 aa13.11□□□□□ -0.31
VMP1-209ENST00000588915 CHST10O43529 356 aa13.11□□□□□ -0.31
VMP1-209ENST00000588915 PRMT3O60678 531 aa13.11□□□□□ -0.31
VMP1-209ENST00000588915 CDC123O75794 336 aaPredicted RBP13.11□□□□□ -0.31
VMP1-209ENST00000588915 TPP2P29144 1249 aaPredicted RBP13.11□□□□□ -0.31
VMP1-209ENST00000588915 AHRP35869 848 aa13.11□□□□□ -0.31
VMP1-209ENST00000588915 VPS41P49754 854 aa13.11□□□□□ -0.31
VMP1-209ENST00000588915 AP1S2P56377 157 aa13.11□□□□□ -0.31
VMP1-209ENST00000588915 TIAL1Q01085 375 aaKnown RBP eCLIP13.11□□□□□ -0.31
VMP1-209ENST00000588915 HSP90AA5PQ58FG0 334 aa13.11□□□□□ -0.31
VMP1-209ENST00000588915 ZNF468Q5VIY5 522 aaPredicted RBP13.11□□□□□ -0.31
VMP1-209ENST00000588915 TMEM211Q6ICI0 200 aa13.11□□□□□ -0.31
VMP1-209ENST00000588915 ZNF227Q86WZ6 799 aa13.11□□□□□ -0.31
VMP1-209ENST00000588915 GPATCH11Q8N954 259 aa13.11□□□□□ -0.31
VMP1-209ENST00000588915 SPC24Q8NBT2 197 aa13.11□□□□□ -0.31
VMP1-209ENST00000588915 C2CD4AQ8NCU7 369 aaPredicted RBP13.11□□□□□ -0.31
VMP1-209ENST00000588915 OR5T3Q8NGG3 340 aa13.11□□□□□ -0.31
VMP1-209ENST00000588915 OR56A3Q8NH54 315 aa13.11□□□□□ -0.31
VMP1-209ENST00000588915 NT5CQ8TCD5 201 aa13.11□□□□□ -0.31
VMP1-209ENST00000588915 CA5BP1Q8WTZ4 195 aa13.11□□□□□ -0.31
VMP1-209ENST00000588915 ASB5Q8WWX0 329 aa13.11□□□□□ -0.31
VMP1-209ENST00000588915 ATL1Q8WXF7 558 aa13.11□□□□□ -0.31
VMP1-209ENST00000588915 SNF8Q96H20 258 aa13.11□□□□□ -0.31
VMP1-209ENST00000588915 PTCHD1Q96NR3 888 aa13.11□□□□□ -0.31
VMP1-209ENST00000588915 TRIM54Q9BYV2 358 aa13.11□□□□□ -0.31
VMP1-209ENST00000588915 ZFP69BQ9UJL9 534 aa13.11□□□□□ -0.31
VMP1-209ENST00000588915 KLF13Q9Y2Y9 288 aaPredicted RBP13.11□□□□□ -0.31
VMP1-209ENST00000588915 PABPN1LA6NDY0 278 aaKnown RBP13.1□□□□□ -0.31
VMP1-209ENST00000588915 ZNF860A6NHJ4 632 aa13.1□□□□□ -0.31
VMP1-209ENST00000588915 SAGE2PA6NJ88 616 aa13.1□□□□□ -0.31
VMP1-209ENST00000588915 KLRC4-KLRK1H3BQV0 150 aa13.1□□□□□ -0.31
VMP1-209ENST00000588915 FCHO1O14526 889 aa13.1□□□□□ -0.31
VMP1-209ENST00000588915 NDUFS4O43181 175 aa13.1□□□□□ -0.31
VMP1-209ENST00000588915 OR1F1O43749 312 aa13.1□□□□□ -0.31
VMP1-209ENST00000588915 PTGS2P35354 604 aa13.1□□□□□ -0.31
VMP1-209ENST00000588915 TERF1P54274 439 aa13.1□□□□□ -0.31
VMP1-209ENST00000588915 TLE4Q04727 773 aa13.1□□□□□ -0.31
VMP1-209ENST00000588915 DHX9Q08211 1270 aaKnown RBP13.1□□□□□ -0.31
VMP1-209ENST00000588915 TERF2Q15554 542 aa13.1□□□□□ -0.31
VMP1-209ENST00000588915 DEFB134Q4QY38 66 aa13.1□□□□□ -0.31
VMP1-209ENST00000588915 RNFT1Q5M7Z0 435 aa13.1□□□□□ -0.31
VMP1-209ENST00000588915 PAQR3Q6TCH7 311 aa13.1□□□□□ -0.31
VMP1-209ENST00000588915 KIAA0408Q6ZU52 694 aa13.1□□□□□ -0.31
VMP1-209ENST00000588915 GALNT7Q86SF2 657 aa13.1□□□□□ -0.31
VMP1-209ENST00000588915 KIF2BQ8N4N8 673 aa13.1□□□□□ -0.31
VMP1-209ENST00000588915 CPSF7Q8N684 471 aaKnown RBP13.1□□□□□ -0.31
VMP1-209ENST00000588915 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.1□□□□□ -0.31
VMP1-209ENST00000588915 ARMC2Q8NEN0 867 aa13.1□□□□□ -0.31
VMP1-209ENST00000588915 NFAM1Q8NET5 270 aaPredicted RBP13.1□□□□□ -0.31
VMP1-209ENST00000588915 C16orf52Q8NHV5 167 aa13.1□□□□□ -0.31
VMP1-209ENST00000588915 FAM57AQ8TBR7 257 aa13.1□□□□□ -0.31
VMP1-209ENST00000588915 ALKBH8Q96BT7 664 aaKnown RBP13.1□□□□□ -0.31
VMP1-209ENST00000588915 SDCCAG3Q96C92 435 aa13.1□□□□□ -0.31
VMP1-209ENST00000588915 PRDM9Q9NQV7 894 aa13.1□□□□□ -0.31
VMP1-209ENST00000588915 PPT2Q9UMR5 302 aa13.1□□□□□ -0.31
VMP1-209ENST00000588915 MAD1L1Q9Y6D9 718 aa13.1□□□□□ -0.31
VMP1-209ENST00000588915 TCRBV16S1A1N1A0A5B0 115 aa13.09□□□□□ -0.31
VMP1-209ENST00000588915 FOXO6A8MYZ6 492 aa13.09□□□□□ -0.31
VMP1-209ENST00000588915 TTC4O95801 387 aa13.09□□□□□ -0.31
VMP1-209ENST00000588915 F7P08709 466 aaPredicted RBP13.09□□□□□ -0.31
VMP1-209ENST00000588915 ENO2P09104 434 aaPredicted RBP13.09□□□□□ -0.31
VMP1-209ENST00000588915 CCDC175P0C221 793 aa13.09□□□□□ -0.31
VMP1-209ENST00000588915 SMIM10L1P0DMW3 83 aa13.09□□□□□ -0.31
VMP1-209ENST00000588915 RNH1P13489 461 aaKnown RBP13.09□□□□□ -0.31
VMP1-209ENST00000588915 SCTRP47872 440 aa13.09□□□□□ -0.31
VMP1-209ENST00000588915 ITGA8P53708 1063 aa13.09□□□□□ -0.31
VMP1-209ENST00000588915 IL2P60568 153 aa13.09□□□□□ -0.31
VMP1-209ENST00000588915 PHKG1Q16816 387 aa13.09□□□□□ -0.31
VMP1-209ENST00000588915 BBS9Q3SYG4 887 aa13.09□□□□□ -0.31
VMP1-209ENST00000588915 MEX3BQ6ZN04 569 aaKnown RBP13.09□□□□□ -0.31
VMP1-209ENST00000588915 MBOAT1Q6ZNC8 495 aa13.09□□□□□ -0.31
VMP1-209ENST00000588915 CDH24Q86UP0 819 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms