RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 BIRC5O15392 142 aa19.6■□□□□ 0.73
VPS53-210ENST00000571456 ATP8B1O43520 1251 aa19.6■□□□□ 0.73
VPS53-210ENST00000571456 RAD1O60671 282 aa19.6■□□□□ 0.73
VPS53-210ENST00000571456 CLEC3AO75596 197 aa19.6■□□□□ 0.73
VPS53-210ENST00000571456 EIF2S1P05198 315 aaKnown RBP19.6■□□□□ 0.73
VPS53-210ENST00000571456 SERPINA6P08185 405 aa19.6■□□□□ 0.73
VPS53-210ENST00000571456 VARSP26640 1264 aaKnown RBP19.6■□□□□ 0.73
VPS53-210ENST00000571456 SERPINB5P36952 375 aa19.6■□□□□ 0.73
VPS53-210ENST00000571456 PKNOX1P55347 436 aa19.6■□□□□ 0.73
VPS53-210ENST00000571456 LCP2Q13094 533 aa19.6■□□□□ 0.73
VPS53-210ENST00000571456 SRSF6Q13247 344 aaKnown RBP19.6■□□□□ 0.73
VPS53-210ENST00000571456 RBBP5Q15291 538 aaKnown RBP19.6■□□□□ 0.73
VPS53-210ENST00000571456 TGIF1Q15583 401 aa19.6■□□□□ 0.73
VPS53-210ENST00000571456 CFAP157Q5JU67 520 aa19.6■□□□□ 0.73
VPS53-210ENST00000571456 VN1R4Q7Z5H5 301 aa19.6■□□□□ 0.73
VPS53-210ENST00000571456 LAS2Q8IYD9 372 aa19.6■□□□□ 0.73
VPS53-210ENST00000571456 NT5CQ8TCD5 201 aa19.6■□□□□ 0.73
VPS53-210ENST00000571456 ZNF382Q96SR6 550 aa19.6■□□□□ 0.73
VPS53-210ENST00000571456 EPN3Q9H201 632 aa19.6■□□□□ 0.73
VPS53-210ENST00000571456 PSD3Q9NYI0 1048 aa19.6■□□□□ 0.73
VPS53-210ENST00000571456 SLC22A7Q9Y694 548 aa19.6■□□□□ 0.73
VPS53-210ENST00000571456 FEZF1A0PJY2 475 aa19.59■□□□□ 0.73
VPS53-210ENST00000571456 BLACEA4D250 179 aa19.59■□□□□ 0.73
VPS53-210ENST00000571456 HMGB1P1B2RPK0 211 aaPredicted RBP19.59■□□□□ 0.73
VPS53-210ENST00000571456 LCMT2O60294 686 aaKnown RBP19.59■□□□□ 0.73
VPS53-210ENST00000571456 NRP2O60462 931 aa19.59■□□□□ 0.73
VPS53-210ENST00000571456 SNUPNO95149 360 aaKnown RBP19.59■□□□□ 0.73
VPS53-210ENST00000571456 TIAF1O95411 115 aa19.59■□□□□ 0.73
VPS53-210ENST00000571456 ONECUT2O95948 504 aa19.59■□□□□ 0.73
VPS53-210ENST00000571456 RORAP35398 523 aa19.59■□□□□ 0.73
VPS53-210ENST00000571456 PIK3CBP42338 1070 aa19.59■□□□□ 0.73
VPS53-210ENST00000571456 ETV4P43268 484 aa19.59■□□□□ 0.73
VPS53-210ENST00000571456 STXBP1P61764 594 aaKnown RBP19.59■□□□□ 0.73
VPS53-210ENST00000571456 ZNF33BQ06732 778 aa19.59■□□□□ 0.73
VPS53-210ENST00000571456 PCLAFQ15004 111 aa19.59■□□□□ 0.73
VPS53-210ENST00000571456 IGFBP7Q16270 282 aa19.59■□□□□ 0.73
VPS53-210ENST00000571456 UNC50Q53HI1 259 aa19.59■□□□□ 0.73
VPS53-210ENST00000571456 ZNF517Q6ZMY9 492 aaPredicted RBP19.59■□□□□ 0.73
VPS53-210ENST00000571456 PLD3Q8IV08 490 aa19.59■□□□□ 0.73
VPS53-210ENST00000571456 DSELQ8IZU8 1212 aa19.59■□□□□ 0.73
VPS53-210ENST00000571456 CNDP1Q96KN2 507 aa19.59■□□□□ 0.73
VPS53-210ENST00000571456 ATP6V1G3Q96LB4 118 aa19.59■□□□□ 0.73
VPS53-210ENST00000571456 CLK4Q9HAZ1 481 aaKnown RBP19.59■□□□□ 0.73
VPS53-210ENST00000571456 ZBTB26Q9HCK0 441 aa19.59■□□□□ 0.73
VPS53-210ENST00000571456 KCNK9Q9NPC2 374 aa19.59■□□□□ 0.73
VPS53-210ENST00000571456 SEMA4BQ9NPR2 832 aaPredicted RBP19.59■□□□□ 0.73
VPS53-210ENST00000571456 PPT2Q9UMR5 302 aa19.59■□□□□ 0.73
VPS53-210ENST00000571456 RUVBL1Q9Y265 456 aaKnown RBP19.59■□□□□ 0.73
VPS53-210ENST00000571456 C2CD3Q4AC94 2353 aa19.59■□□□□ 0.73
VPS53-210ENST00000571456 LRBAP50851 2863 aa19.58■□□□□ 0.73
VPS53-210ENST00000571456 C21orf140B9A014 251 aa19.58■□□□□ 0.72
VPS53-210ENST00000571456 MEN1O00255 615 aa19.58■□□□□ 0.72
VPS53-210ENST00000571456 OR7A17O14581 309 aa19.58■□□□□ 0.72
VPS53-210ENST00000571456 NDUFS4O43181 175 aa19.58■□□□□ 0.72
VPS53-210ENST00000571456 CREB1P16220 341 aa19.58■□□□□ 0.72
VPS53-210ENST00000571456 ZNF28P17035 718 aa19.58■□□□□ 0.72
VPS53-210ENST00000571456 ARL1P40616 181 aaPredicted RBP19.58■□□□□ 0.72
VPS53-210ENST00000571456 ARFIP1P53367 373 aa19.58■□□□□ 0.72
VPS53-210ENST00000571456 MAGOHP61326 146 aaKnown RBP19.58■□□□□ 0.72
VPS53-210ENST00000571456 MEF2AQ02078 507 aaPredicted RBP19.58■□□□□ 0.72
VPS53-210ENST00000571456 TGM3Q08188 693 aa19.58■□□□□ 0.72
VPS53-210ENST00000571456 GALNT1Q10472 559 aaPredicted RBP19.58■□□□□ 0.72
VPS53-210ENST00000571456 TRAF3Q13114 568 aa19.58■□□□□ 0.72
VPS53-210ENST00000571456 HERC3Q15034 1050 aa19.58■□□□□ 0.72
VPS53-210ENST00000571456 RBBP7Q16576 425 aa19.58■□□□□ 0.72
VPS53-210ENST00000571456 ABHD13Q7L211 337 aa19.58■□□□□ 0.72
VPS53-210ENST00000571456 MILR1Q7Z6M3 343 aa19.58■□□□□ 0.72
VPS53-210ENST00000571456 CACNA2D3Q8IZS8 1091 aa19.58■□□□□ 0.72
VPS53-210ENST00000571456 ZNF740Q8NDX6 193 aa19.58■□□□□ 0.72
VPS53-210ENST00000571456 SRFBP1Q8NEF9 429 aaKnown RBP19.58■□□□□ 0.72
VPS53-210ENST00000571456 KIAA1143Q96AT1 154 aaPredicted RBP19.58■□□□□ 0.72
VPS53-210ENST00000571456 SPNS1Q9H2V7 528 aa19.58■□□□□ 0.72
VPS53-210ENST00000571456 LHX9Q9NQ69 397 aa19.58■□□□□ 0.72
VPS53-210ENST00000571456 SLC17A7Q9P2U7 560 aa19.58■□□□□ 0.72
VPS53-210ENST00000571456 TRPS1Q9UHF7 1281 aa19.58■□□□□ 0.72
VPS53-210ENST00000571456 A0A088AWK7 358 aa19.57■□□□□ 0.72
VPS53-210ENST00000571456 LRRC14BA6NHZ5 514 aa19.57■□□□□ 0.72
VPS53-210ENST00000571456 PRAMEF4O60810 478 aa19.57■□□□□ 0.72
VPS53-210ENST00000571456 ENO1P06733 434 aaKnown RBP19.57■□□□□ 0.72
VPS53-210ENST00000571456 BPGMP07738 259 aa19.57■□□□□ 0.72
VPS53-210ENST00000571456 ZNF10P21506 573 aaPredicted RBP19.57■□□□□ 0.72
VPS53-210ENST00000571456 CCR10P46092 362 aa19.57■□□□□ 0.72
VPS53-210ENST00000571456 NAGLUP54802 743 aa19.57■□□□□ 0.72
VPS53-210ENST00000571456 DCDP81605 110 aaKnown RBP19.57■□□□□ 0.72
VPS53-210ENST00000571456 PRAMEF9Q5VWM5 478 aa19.57■□□□□ 0.72
VPS53-210ENST00000571456 TMEM214Q6NUQ4 689 aaKnown RBP19.57■□□□□ 0.72
VPS53-210ENST00000571456 FRMD7Q6ZUT3 714 aa19.57■□□□□ 0.72
VPS53-210ENST00000571456 TTLL10Q6ZVT0 673 aa19.57■□□□□ 0.72
VPS53-210ENST00000571456 ZFAND4Q86XD8 727 aa19.57■□□□□ 0.72
VPS53-210ENST00000571456 PTRH1Q86Y79 214 aaKnown RBP19.57■□□□□ 0.72
VPS53-210ENST00000571456 MYLK4Q86YV6 388 aaPredicted RBP19.57■□□□□ 0.72
VPS53-210ENST00000571456 C10orf107Q8IVU9 208 aa19.57■□□□□ 0.72
VPS53-210ENST00000571456 IL22RA1Q8N6P7 574 aa19.57■□□□□ 0.72
VPS53-210ENST00000571456 CCNYL1Q8N7R7 359 aa19.57■□□□□ 0.72
VPS53-210ENST00000571456 ANKRD53Q8N9V6 530 aa19.57■□□□□ 0.72
VPS53-210ENST00000571456 ZSCAN1Q8NBB4 408 aa19.57■□□□□ 0.72
VPS53-210ENST00000571456 GALNT6Q8NCL4 622 aa19.57■□□□□ 0.72
VPS53-210ENST00000571456 OR7G3Q8NG95 312 aa19.57■□□□□ 0.72
VPS53-210ENST00000571456 NKD1Q969G9 470 aa19.57■□□□□ 0.72
VPS53-210ENST00000571456 GBP5Q96PP8 586 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms