RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 COX20Q5RI15 118 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 PPP2R2DQ66LE6 453 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 OR2T5Q6IEZ7 315 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 LPCAT2Q7L5N7 544 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 MMP21Q8N119 569 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 ARL10Q8N8L6 244 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 ANKRD53Q8N9V6 530 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 TP53I13Q8NBR0 393 aaPredicted RBP19.43■□□□□ 0.7
CLN3-230ENST00000568076 OR2T29Q8NH02 315 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 WDR26Q9H7D7 661 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 TM9SF3Q9HD45 589 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 THEGQ9P2T0 379 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 CORO2BQ9UQ03 480 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 WDR37Q9Y2I8 494 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 CKAP5Q14008 2032 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 FABP3P05413 133 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 PTX3P26022 381 aaPredicted RBP19.43■□□□□ 0.7
CLN3-230ENST00000568076 POLR2IP36954 125 aaKnown RBP19.43■□□□□ 0.7
CLN3-230ENST00000568076 CLCNKAP51800 687 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 CTBSQ01459 385 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 LRRC74AQ0VAA2 488 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 ARHGAP19Q14CB8 494 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 IQCCQ4KMZ1 466 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 SZT2Q5T011 3432 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 TMEM184AQ6ZMB5 413 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 C17orf64Q86WR6 236 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 C8orf59Q8N0T1 100 aaPredicted RBP19.43■□□□□ 0.7
CLN3-230ENST00000568076 KRT78Q8N1N4 520 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 ELSPBP1Q96BH3 223 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 PPCDCQ96CD2 204 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 ING2Q9H160 280 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 ATAD3AQ9NVI7 634 aa19.43■□□□□ 0.7
CLN3-230ENST00000568076 A0A1W2PPV9 198 aa19.42■□□□□ 0.7
CLN3-230ENST00000568076 K7EQS6 105 aa19.42■□□□□ 0.7
CLN3-230ENST00000568076 GPR37L1O60883 481 aa19.42■□□□□ 0.7
CLN3-230ENST00000568076 IL3P08700 152 aa19.42■□□□□ 0.7
CLN3-230ENST00000568076 TPP2P29144 1249 aaPredicted RBP19.42■□□□□ 0.7
CLN3-230ENST00000568076 TIE1P35590 1138 aa19.42■□□□□ 0.7
CLN3-230ENST00000568076 KIR2DL1P43626 348 aaPredicted RBP19.42■□□□□ 0.7
CLN3-230ENST00000568076 GALK1P51570 392 aa19.42■□□□□ 0.7
CLN3-230ENST00000568076 PHEXP78562 749 aa19.42■□□□□ 0.7
CLN3-230ENST00000568076 PMS2P3Q13401 168 aa19.42■□□□□ 0.7
CLN3-230ENST00000568076 ZBED5Q49AG3 693 aa19.42■□□□□ 0.7
CLN3-230ENST00000568076 KIAA1211LQ6NV74 962 aa19.42■□□□□ 0.7
CLN3-230ENST00000568076 R3HCC1LQ7Z5L2 792 aaKnown RBP19.42■□□□□ 0.7
CLN3-230ENST00000568076 GPR141Q7Z602 305 aa19.42■□□□□ 0.7
CLN3-230ENST00000568076 SLC9B2Q86UD5 537 aa19.42■□□□□ 0.7
CLN3-230ENST00000568076 CYP4Z1Q86W10 505 aa19.42■□□□□ 0.7
CLN3-230ENST00000568076 ZNF555Q8NEP9 628 aa19.42■□□□□ 0.7
CLN3-230ENST00000568076 ZNF717Q9BY31 904 aaPredicted RBP19.42■□□□□ 0.7
CLN3-230ENST00000568076 SPASTQ9UBP0 616 aa19.42■□□□□ 0.7
CLN3-230ENST00000568076 RAPGEFL1Q9UHV5 662 aa19.42■□□□□ 0.7
CLN3-230ENST00000568076 C3orf18Q9UK00 162 aa19.42■□□□□ 0.7
CLN3-230ENST00000568076 FAF1Q9UNN5 650 aaPredicted RBP19.42■□□□□ 0.7
CLN3-230ENST00000568076 LATO43561 262 aa19.41■□□□□ 0.7
CLN3-230ENST00000568076 MITFO75030 526 aaPredicted RBP19.41■□□□□ 0.7
CLN3-230ENST00000568076 FKBP9O95302 570 aa19.41■□□□□ 0.7
CLN3-230ENST00000568076 LAMP2P13473 410 aa19.41■□□□□ 0.7
CLN3-230ENST00000568076 ETFAP13804 333 aa19.41■□□□□ 0.7
CLN3-230ENST00000568076 IL7RP16871 459 aa19.41■□□□□ 0.7
CLN3-230ENST00000568076 AQP1P29972 269 aa19.41■□□□□ 0.7
CLN3-230ENST00000568076 PCGF2P35227 344 aa19.41■□□□□ 0.7
CLN3-230ENST00000568076 BIRC2Q13490 618 aa19.41■□□□□ 0.7
CLN3-230ENST00000568076 CTU2Q2VPK5 515 aaKnown RBP19.41■□□□□ 0.7
CLN3-230ENST00000568076 TMEM26Q6ZUK4 368 aa19.41■□□□□ 0.7
CLN3-230ENST00000568076 ALDH16A1Q8IZ83 802 aa19.41■□□□□ 0.7
CLN3-230ENST00000568076 SLC35A5Q9BS91 424 aa19.41■□□□□ 0.7
CLN3-230ENST00000568076 GABARAPL1Q9H0R8 117 aa19.41■□□□□ 0.7
CLN3-230ENST00000568076 RHBGQ9H310 441 aa19.41■□□□□ 0.7
CLN3-230ENST00000568076 PELI2Q9HAT8 420 aa19.41■□□□□ 0.7
CLN3-230ENST00000568076 WASH6PQ9NQA3 447 aa19.41■□□□□ 0.7
CLN3-230ENST00000568076 ACSL6Q9UKU0 697 aa19.41■□□□□ 0.7
CLN3-230ENST00000568076 PLPP1O14494 284 aa19.41■□□□□ 0.7
CLN3-230ENST00000568076 RPN2P04844 631 aa19.41■□□□□ 0.7
CLN3-230ENST00000568076 ACP5P13686 325 aa19.41■□□□□ 0.7
CLN3-230ENST00000568076 MAGEA10P43363 369 aaPredicted RBP19.41■□□□□ 0.7
CLN3-230ENST00000568076 CYP4F2P78329 520 aa19.41■□□□□ 0.7
CLN3-230ENST00000568076 MLF2Q15773 248 aaPredicted RBP19.41■□□□□ 0.7
CLN3-230ENST00000568076 LAIR2Q6ISS4 152 aa19.41■□□□□ 0.7
CLN3-230ENST00000568076 ANGPTL8Q6UXH0 198 aa19.41■□□□□ 0.7
CLN3-230ENST00000568076 NUDT18Q6ZVK8 323 aa19.41■□□□□ 0.7
CLN3-230ENST00000568076 KCTD8Q6ZWB6 473 aa19.41■□□□□ 0.7
CLN3-230ENST00000568076 LINC01555Q8NAE3 123 aa19.41■□□□□ 0.7
CLN3-230ENST00000568076 CHDHQ8NE62 594 aaPredicted RBP19.41■□□□□ 0.7
CLN3-230ENST00000568076 TMEM121BQ9BXQ6 578 aaPredicted RBP19.41■□□□□ 0.7
CLN3-230ENST00000568076 MKRN2Q9H000 416 aaKnown RBP19.41■□□□□ 0.7
CLN3-230ENST00000568076 TRIT1Q9H3H1 467 aaKnown RBP19.41■□□□□ 0.7
CLN3-230ENST00000568076 LIN28AQ9H9Z2 209 aaKnown RBP19.41■□□□□ 0.7
CLN3-230ENST00000568076 LOC100130705A0A1B0GUX0 176 aa19.4■□□□□ 0.7
CLN3-230ENST00000568076 FEZF1A0PJY2 475 aa19.4■□□□□ 0.7
CLN3-230ENST00000568076 PRR23AA6NEV1 266 aa19.4■□□□□ 0.7
CLN3-230ENST00000568076 MYO1GB0I1T2 1018 aa19.4■□□□□ 0.7
CLN3-230ENST00000568076 RTCAO00442 366 aaKnown RBP19.4■□□□□ 0.7
CLN3-230ENST00000568076 TNFRSF21O75509 655 aa19.4■□□□□ 0.7
CLN3-230ENST00000568076 SLC35G4P0C7Q5 338 aa19.4■□□□□ 0.7
CLN3-230ENST00000568076 RPL3P39023 403 aaKnown RBP19.4■□□□□ 0.7
CLN3-230ENST00000568076 CRATP43155 626 aa19.4■□□□□ 0.7
CLN3-230ENST00000568076 DAPP51397 102 aa19.4■□□□□ 0.7
CLN3-230ENST00000568076 ESRRGP62508 458 aa19.4■□□□□ 0.7
CLN3-230ENST00000568076 KCNJ10P78508 379 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms