RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 KLHL18O94889 574 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 CLDN9O95484 217 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 SERPINA6P08185 405 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 SMIM10L1P0DMW3 83 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 PRKAR1AP10644 381 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 FBLP22087 321 aaKnown RBP18.54■□□□□ 0.56
CLN3-225ENST00000566824 NEK2P51955 445 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 CCNG1P51959 295 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 RPS15P62841 145 aaKnown RBP18.54■□□□□ 0.56
CLN3-225ENST00000566824 FAM53BQ14153 422 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 RBBP7Q16576 425 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 PAGE2BQ5JRK9 111 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 LIPJQ5W064 366 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 LETMD1Q6P1Q0 360 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 MED27Q6P2C8 311 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 PRMT9Q6P2P2 845 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 SYVN1Q86TM6 617 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 SLC22A9Q8IVM8 553 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 CCNYL1Q8N7R7 359 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 OR5T3Q8NGG3 340 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 ATP6V1E2Q96A05 226 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 SMIM10Q96HG1 83 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 F2RL3Q96RI0 385 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 MESP1Q9BRJ9 268 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 NTMT1Q9BV86 223 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 GPR87Q9BY21 358 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 PITHD1Q9GZP4 211 aaPredicted RBP18.54■□□□□ 0.56
CLN3-225ENST00000566824 OXSMQ9NWU1 459 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 HCN3Q9P1Z3 774 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 TCFL5Q9UL49 500 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 SLC22A7Q9Y694 548 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 ZFYVE26Q68DK2 2539 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 CACNA1GO43497 2377 aa18.54■□□□□ 0.56
CLN3-225ENST00000566824 LRIT2A6NDA9 550 aa18.53■□□□□ 0.56
CLN3-225ENST00000566824 ANKDD1BA6NHY2 528 aa18.53■□□□□ 0.56
CLN3-225ENST00000566824 C9J4A7 227 aa18.53■□□□□ 0.56
CLN3-225ENST00000566824 UBFD1O14562 309 aaKnown RBP18.53■□□□□ 0.56
CLN3-225ENST00000566824 RDH16O75452 317 aa18.53■□□□□ 0.56
CLN3-225ENST00000566824 CLEC3AO75596 197 aa18.53■□□□□ 0.56
CLN3-225ENST00000566824 CREG1O75629 220 aa18.53■□□□□ 0.56
CLN3-225ENST00000566824 UMODP07911 640 aa18.53■□□□□ 0.56
CLN3-225ENST00000566824 ALDH3A1P30838 453 aa18.53■□□□□ 0.56
CLN3-225ENST00000566824 EFNA3P52797 238 aa18.53■□□□□ 0.56
CLN3-225ENST00000566824 NAGLUP54802 743 aa18.53■□□□□ 0.56
CLN3-225ENST00000566824 OLR1P78380 273 aa18.53■□□□□ 0.56
CLN3-225ENST00000566824 RGS1Q08116 209 aa18.53■□□□□ 0.56
CLN3-225ENST00000566824 DDX39BQ13838 428 aaKnown RBP18.53■□□□□ 0.56
CLN3-225ENST00000566824 DSG2Q14126 1118 aa18.53■□□□□ 0.56
CLN3-225ENST00000566824 ERV3-1Q14264 604 aa18.53■□□□□ 0.56
CLN3-225ENST00000566824 ZRSR2Q15696 482 aaKnown RBP18.53■□□□□ 0.56
CLN3-225ENST00000566824 NKG7Q16617 165 aa18.53■□□□□ 0.56
CLN3-225ENST00000566824 HIST2H2ACQ16777 129 aaPredicted RBP18.53■□□□□ 0.56
CLN3-225ENST00000566824 NDUFA9Q16795 377 aa18.53■□□□□ 0.56
CLN3-225ENST00000566824 DEFB134Q4QY38 66 aa18.53■□□□□ 0.56
CLN3-225ENST00000566824 VWA2Q5GFL6 755 aa18.53■□□□□ 0.56
CLN3-225ENST00000566824 HIST2H2AA3Q6FI13 130 aa18.53■□□□□ 0.56
CLN3-225ENST00000566824 UBE3DQ7Z6J8 389 aa18.53■□□□□ 0.56
CLN3-225ENST00000566824 PRSS58Q8IYP2 241 aa18.53■□□□□ 0.56
CLN3-225ENST00000566824 HUS1BQ8NHY5 278 aa18.53■□□□□ 0.56
CLN3-225ENST00000566824 RDH11Q8TC12 318 aa18.53■□□□□ 0.56
CLN3-225ENST00000566824 MTFMTQ96DP5 389 aaKnown RBP18.53■□□□□ 0.56
CLN3-225ENST00000566824 MS4A6EQ96DS6 147 aa18.53■□□□□ 0.56
CLN3-225ENST00000566824 MTERF1Q99551 399 aaKnown RBP18.53■□□□□ 0.56
CLN3-225ENST00000566824 TMBIM4Q9HC24 238 aa18.53■□□□□ 0.56
CLN3-225ENST00000566824 GPN3Q9UHW5 284 aaPredicted RBP18.53■□□□□ 0.56
CLN3-225ENST00000566824 KCND3Q9UK17 655 aa18.53■□□□□ 0.56
CLN3-225ENST00000566824 PTRH2Q9Y3E5 179 aaKnown RBP18.53■□□□□ 0.56
CLN3-225ENST00000566824 GALR3O60755 368 aaPredicted RBP18.52■□□□□ 0.56
CLN3-225ENST00000566824 JRKO75564 520 aa18.52■□□□□ 0.56
CLN3-225ENST00000566824 OR4F21O95013 312 aa18.52■□□□□ 0.56
CLN3-225ENST00000566824 NSA2O95478 260 aaKnown RBP18.52■□□□□ 0.56
CLN3-225ENST00000566824 TGFB1P01137 390 aa18.52■□□□□ 0.56
CLN3-225ENST00000566824 ALOX12P18054 663 aa18.52■□□□□ 0.56
CLN3-225ENST00000566824 ARL1P40616 181 aaPredicted RBP18.52■□□□□ 0.56
CLN3-225ENST00000566824 ETV4P43268 484 aa18.52■□□□□ 0.56
CLN3-225ENST00000566824 UCNP55089 124 aa18.52■□□□□ 0.56
CLN3-225ENST00000566824 DNAJB13P59910 316 aa18.52■□□□□ 0.56
CLN3-225ENST00000566824 ADPRMQ3LIE5 342 aa18.52■□□□□ 0.56
CLN3-225ENST00000566824 TCHHL1Q5QJ38 904 aaPredicted RBP18.52■□□□□ 0.56
CLN3-225ENST00000566824 MILR1Q7Z6M3 343 aa18.52■□□□□ 0.56
CLN3-225ENST00000566824 LAPTM4BQ86VI4 370 aa18.52■□□□□ 0.56
CLN3-225ENST00000566824 TTLQ8NG68 377 aa18.52■□□□□ 0.56
CLN3-225ENST00000566824 WDR20Q8TBZ3 569 aa18.52■□□□□ 0.56
CLN3-225ENST00000566824 PPP4R1Q8TF05 950 aa18.52■□□□□ 0.56
CLN3-225ENST00000566824 FKBP10Q96AY3 582 aa18.52■□□□□ 0.56
CLN3-225ENST00000566824 MVB12AQ96EY5 273 aa18.52■□□□□ 0.56
CLN3-225ENST00000566824 SPSB2Q99619 263 aa18.52■□□□□ 0.56
CLN3-225ENST00000566824 MS4A8Q9BY19 250 aa18.52■□□□□ 0.56
CLN3-225ENST00000566824 IQCGQ9H095 443 aaKnown RBP18.52■□□□□ 0.56
CLN3-225ENST00000566824 SLC26A1Q9H2B4 701 aa18.52■□□□□ 0.56
CLN3-225ENST00000566824 SOX17Q9H6I2 414 aaPredicted RBP18.52■□□□□ 0.56
CLN3-225ENST00000566824 ANKHQ9HCJ1 492 aa18.52■□□□□ 0.56
CLN3-225ENST00000566824 TNFRSF12AQ9NP84 129 aa18.52■□□□□ 0.56
CLN3-225ENST00000566824 FARSBQ9NSD9 589 aaKnown RBP18.52■□□□□ 0.56
CLN3-225ENST00000566824 SENP1Q9P0U3 644 aa18.52■□□□□ 0.56
CLN3-225ENST00000566824 TRPC4Q9UBN4 977 aa18.52■□□□□ 0.56
CLN3-225ENST00000566824 CDC14AQ9UNH5 594 aa18.52■□□□□ 0.56
CLN3-225ENST00000566824 NUP210LQ5VU65 1888 aa18.52■□□□□ 0.55
CLN3-225ENST00000566824 VSTM2BA6NLU5 285 aa18.51■□□□□ 0.55
CLN3-225ENST00000566824 ZNF891A8MT65 544 aaPredicted RBP18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms