RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 TBCDQ9BTW9 1192 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 MRPL1Q9BYD6 325 aaKnown RBP12.23□□□□□ -0.45
CLK3-214ENST00000564096 BRINP2Q9C0B6 783 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 SLC6A16Q9GZN6 736 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 SAR1AQ9NR31 198 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 TMEM45AQ9NWC5 275 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 SIRT5Q9NXA8 310 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 AKAP7Q9P0M2 348 aaPredicted RBP12.23□□□□□ -0.45
CLK3-214ENST00000564096 TMEM9Q9P0T7 183 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 PDP2Q9P2J9 529 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 GIMAP2Q9UG22 337 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 MCM8Q9UJA3 840 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 ADAM29Q9UKF5 820 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 G3BP2Q9UN86 482 aaKnown RBP12.23□□□□□ -0.45
CLK3-214ENST00000564096 PCDHGA1Q9Y5H4 931 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 COPG1Q9Y678 874 aaKnown RBP12.23□□□□□ -0.45
CLK3-214ENST00000564096 IGHV5-10-1A0A0J9YXX1 117 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 LRIT2A6NDA9 550 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 TMX2-CTNND1H3BSU7 103 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 SAP18O00422 153 aaKnown RBP12.22□□□□□ -0.45
CLK3-214ENST00000564096 SH3BGRLO75368 114 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 ALDOCP09972 364 aaKnown RBP12.22□□□□□ -0.45
CLK3-214ENST00000564096 DDX5P17844 614 aaKnown RBP12.22□□□□□ -0.45
CLK3-214ENST00000564096 TGM1P22735 817 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 HNRNPH1P31943 449 aaKnown RBP12.22□□□□□ -0.45
CLK3-214ENST00000564096 ASMTP46597 345 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 SEPHS1P49903 392 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 CLNS1AP54105 237 aaKnown RBP12.22□□□□□ -0.45
CLK3-214ENST00000564096 VSX2P58304 361 aaPredicted RBP12.22□□□□□ -0.45
CLK3-214ENST00000564096 CFHR1Q03591 330 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 TBL3Q12788 808 aaKnown RBP12.22□□□□□ -0.45
CLK3-214ENST00000564096 GRM7Q14831 915 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 HERC3Q15034 1050 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 RFTN2Q52LD8 501 aaPredicted RBP12.22□□□□□ -0.45
CLK3-214ENST00000564096 PHF19Q5T6S3 580 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 FRMPD2BQ6IN97 320 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 NOXRED1Q6NXP6 359 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 FBXO42Q6P3S6 717 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 GALNT18Q6P9A2 607 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 CYP20A1Q6UW02 462 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 IKBIPQ70UQ0 350 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 GPR135Q8IZ08 494 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 LIX1Q8N485 282 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 DNAJC22Q8N4W6 341 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 CPSF7Q8N684 471 aaKnown RBP12.22□□□□□ -0.45
CLK3-214ENST00000564096 NETO1Q8TDF5 533 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 CHTF18Q8WVB6 975 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 KLHL6Q8WZ60 621 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 MS4A6EQ96DS6 147 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 TM4SF19Q96DZ7 209 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 FCRL1Q96LA6 429 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 F2RL3Q96RI0 385 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 C17orf62Q9BQA9 187 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 EBPLQ9BY08 206 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 MYLK2Q9H1R3 596 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 SDR39U1Q9NRG7 319 aaPredicted RBP12.22□□□□□ -0.45
CLK3-214ENST00000564096 ZIM2Q9NZV7 527 aa12.22□□□□□ -0.45
CLK3-214ENST00000564096 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.21□□□□□ -0.45
CLK3-214ENST00000564096 A8MU76 341 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 TMEM150CB9EJG8 249 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 PSMD12O00232 456 aaPredicted RBP12.21□□□□□ -0.45
CLK3-214ENST00000564096 PLPP1O14494 284 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 P2RX6O15547 441 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 PRMT3O60678 531 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 GUCY1B2O75343 617 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 KIAA0754O94854 1291 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 ANXA4P09525 319 aaPredicted RBP12.21□□□□□ -0.45
CLK3-214ENST00000564096 SDC1P18827 310 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 JAK1P23458 1154 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 HPCAL1P37235 193 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 RPL3P39023 403 aaKnown RBP12.21□□□□□ -0.45
CLK3-214ENST00000564096 MAPK12P53778 367 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 PLA2G16P53816 162 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 DIO3P55073 304 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 NHLH1Q02575 133 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 UBAP2LQ14157 1087 aaKnown RBP12.21□□□□□ -0.45
CLK3-214ENST00000564096 KIAA0040Q15053 153 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 CCNYL2Q5T2Q4 361 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 GARNL3Q5VVW2 1013 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 SLITRK4Q8IW52 837 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 GLB1L3Q8NCI6 653 aaPredicted RBP12.21□□□□□ -0.45
CLK3-214ENST00000564096 OR8K5Q8NH50 307 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 CDC26Q8NHZ8 85 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 ZCCHC10Q8TBK6 192 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 CMTM5Q96DZ9 223 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 DPY30Q9C005 99 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 STRADBQ9C0K7 418 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 ZNF385DQ9H6B1 395 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 FAM60AQ9NP50 221 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 LYARQ9NX58 379 aaKnown RBP12.21□□□□□ -0.45
CLK3-214ENST00000564096 ARMCX1Q9P291 453 aa12.21□□□□□ -0.45
CLK3-214ENST00000564096 WBP11Q9Y2W2 641 aaKnown RBP12.21□□□□□ -0.45
CLK3-214ENST00000564096 LOC105369274A0A096LPK9 316 aa12.2□□□□□ -0.46
CLK3-214ENST00000564096 LOC102723532A0A0G2JNH3 316 aa12.2□□□□□ -0.46
CLK3-214ENST00000564096 DYTNA2CJ06 578 aa12.2□□□□□ -0.46
CLK3-214ENST00000564096 CCT8L1PA6NM43 557 aa12.2□□□□□ -0.46
CLK3-214ENST00000564096 GDF9O60383 454 aa12.2□□□□□ -0.46
CLK3-214ENST00000564096 PRAMEF10O60809 474 aa12.2□□□□□ -0.46
CLK3-214ENST00000564096 OR2B3O76000 313 aa12.2□□□□□ -0.46
CLK3-214ENST00000564096 SCELO95171 688 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms