RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 CDYL2Q8N8U2 506 aa11.28□□□□□ -0.6
LDLR-212ENST00000560467 PPFIBP2Q8ND30 876 aa11.28□□□□□ -0.6
LDLR-212ENST00000560467 OR4F6Q8NGB9 312 aa11.28□□□□□ -0.6
LDLR-212ENST00000560467 AGAP11Q8TF27 550 aa11.28□□□□□ -0.6
LDLR-212ENST00000560467 NSUN5Q96P11 429 aaKnown RBP11.28□□□□□ -0.6
LDLR-212ENST00000560467 IL17FQ96PD4 163 aa11.28□□□□□ -0.6
LDLR-212ENST00000560467 TGM7Q96PF1 710 aa11.28□□□□□ -0.6
LDLR-212ENST00000560467 SORT1Q99523 831 aa11.28□□□□□ -0.6
LDLR-212ENST00000560467 AIF1LQ9BQI0 150 aa11.28□□□□□ -0.6
LDLR-212ENST00000560467 ACAT2Q9BWD1 397 aa11.28□□□□□ -0.6
LDLR-212ENST00000560467 PITHD1Q9GZP4 211 aaPredicted RBP11.28□□□□□ -0.6
LDLR-212ENST00000560467 EHD1Q9H4M9 534 aa11.28□□□□□ -0.6
LDLR-212ENST00000560467 XKR8Q9H6D3 395 aa11.28□□□□□ -0.6
LDLR-212ENST00000560467 ZNF395Q9H8N7 513 aaPredicted RBP11.28□□□□□ -0.6
LDLR-212ENST00000560467 ACSS2Q9NR19 701 aa11.28□□□□□ -0.6
LDLR-212ENST00000560467 HRASLS2Q9NWW9 162 aa11.28□□□□□ -0.6
LDLR-212ENST00000560467 TAC3Q9UHF0 121 aa11.28□□□□□ -0.6
LDLR-212ENST00000560467 ADGRE2Q9UHX3 823 aa11.28□□□□□ -0.6
LDLR-212ENST00000560467 ZDHHC2Q9UIJ5 367 aa11.28□□□□□ -0.6
LDLR-212ENST00000560467 HAO1Q9UJM8 370 aa11.28□□□□□ -0.6
LDLR-212ENST00000560467 POLHQ9Y253 713 aa11.28□□□□□ -0.6
LDLR-212ENST00000560467 OR6C74A6NCV1 312 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 SLC28A1O00337 649 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 OR7A17O14581 309 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 RGS14O43566 566 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 KIF1CO43896 1103 aaKnown RBP11.27□□□□□ -0.61
LDLR-212ENST00000560467 CCDC22O60826 627 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 OR4F21O95013 312 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 C9P02748 559 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 CHRM5P08912 532 aaPredicted RBP11.27□□□□□ -0.61
LDLR-212ENST00000560467 ERGP11308 486 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 GNLYP22749 145 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 CASP2P42575 452 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 PRDX1Q06830 199 aaKnown RBP11.27□□□□□ -0.61
LDLR-212ENST00000560467 GRB7Q14451 532 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 PDCD2Q16342 344 aaPredicted RBP11.27□□□□□ -0.61
LDLR-212ENST00000560467 CPSF6Q16630 551 aaKnown RBP eCLIP11.27□□□□□ -0.61
LDLR-212ENST00000560467 GGTA1PQ4G0N0 100 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 METTL21CQ5VZV1 264 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 ATG9BQ674R7 924 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 MED27Q6P2C8 311 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 NXPE4Q6UWF7 544 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 RPS27LQ71UM5 84 aaKnown RBP11.27□□□□□ -0.61
LDLR-212ENST00000560467 PIGWQ7Z7B1 504 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 SYVN1Q86TM6 617 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 L3MBTL4Q8NA19 623 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 MOCOSQ96EN8 888 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 THOC1Q96FV9 657 aaKnown RBP11.27□□□□□ -0.61
LDLR-212ENST00000560467 SEC16BQ96JE7 1060 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 OR6C1Q96RD1 312 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 CENPKQ9BS16 269 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 C20orf27Q9GZN8 174 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 TWSG1Q9GZX9 223 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 PELI2Q9HAT8 420 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 MRPS30Q9NP92 439 aaKnown RBP11.27□□□□□ -0.61
LDLR-212ENST00000560467 ICKQ9UPZ9 632 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 PCDHB3Q9Y5E6 796 aa11.27□□□□□ -0.61
LDLR-212ENST00000560467 EBAG9O00559 213 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 UBFD1O14562 309 aaKnown RBP11.26□□□□□ -0.61
LDLR-212ENST00000560467 RASSF9O75901 435 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 UBXN7O94888 489 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 AGFG2O95081 481 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 RNF224P0DH78 156 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 EZRP15311 586 aaKnown RBP11.26□□□□□ -0.61
LDLR-212ENST00000560467 PCSK2P16519 638 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 PCDH1Q08174 1060 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 DNASE1L3Q13609 305 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 DOC2AQ14183 400 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 FASTKQ14296 549 aaKnown RBP11.26□□□□□ -0.61
LDLR-212ENST00000560467 SGO1Q5FBB7 561 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 KANK2Q63ZY3 851 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 ICE2Q659A1 982 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 TMPRSS11BQ86T26 416 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 PARP9Q8IXQ6 854 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 GBP7Q8N8V2 638 aaPredicted RBP11.26□□□□□ -0.61
LDLR-212ENST00000560467 TTLQ8NG68 377 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 OR52B6Q8NGF0 335 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 CEP70Q8NHQ1 597 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 CT55Q8WUE5 264 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 TWIST2Q8WVJ9 160 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 SELENOMQ8WWX9 145 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 RSC1A1Q92681 617 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 NEIL2Q969S2 332 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 C19orf60Q96EN9 201 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 ZDHHC12Q96GR4 267 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 CDK15Q96Q40 435 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 TMEM120AQ9BXJ8 343 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 NUF2Q9BZD4 464 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 ZBTB26Q9HCK0 441 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 TMEM184CQ9NVA4 438 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 PLEKHB1Q9UF11 243 aaPredicted RBP11.26□□□□□ -0.61
LDLR-212ENST00000560467 ZNF490Q9ULM2 529 aaPredicted RBP11.26□□□□□ -0.61
LDLR-212ENST00000560467 RNF11Q9Y3C5 154 aa11.26□□□□□ -0.61
LDLR-212ENST00000560467 CREBBPQ92793 2442 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 ANKDD1BA6NHY2 528 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 E7EQ34 232 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 SKAP2O75563 359 aaPredicted RBP11.25□□□□□ -0.61
LDLR-212ENST00000560467 CREG1O75629 220 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 WFS1O76024 890 aa11.25□□□□□ -0.61
LDLR-212ENST00000560467 MYO1DO94832 1006 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms