RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	GPRC5B	Q9NZH0	403 aa		13.28	□□□□□ -0.28
TPM1-223	ENST00000560445	MRPS33	Q9Y291	106 aa	Known RBP	13.28	□□□□□ -0.28
TPM1-223	ENST00000560445	CSAG2	Q9Y5P2	127 aa		13.28	□□□□□ -0.28
TPM1-223	ENST00000560445	CPAMD8	Q8IZJ3	1885 aa		13.27	□□□□□ -0.28
TPM1-223	ENST00000560445	NPEPPSL1	A6NEC2	478 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	WIPF3	A6NGB9	483 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	LCMT2	O60294	686 aa	Known RBP	13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	LDLR	P01130	860 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	STATH	P02808	62 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	ITGAM	P11215	1152 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	STMN1	P16949	149 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	STX2	P32856	288 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	GP5	P40197	560 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	OR4D2	P58180	307 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	TAS2R39	P59534	338 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	NAB1	Q13506	487 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	RBBP5	Q15291	538 aa	Known RBP	13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	SFT2D3	Q587I9	215 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	PAGE2B	Q5JRK9	111 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	ACER2	Q5QJU3	275 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	QSOX2	Q6ZRP7	698 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	CEP128	Q6ZU80	1094 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	CCDC91	Q7Z6B0	441 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	TMEM178A	Q8NBL3	297 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	PEX11G	Q96HA9	241 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	TSNARE1	Q96NA8	513 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	OR4K3	Q96R72	315 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	EHD1	Q9H4M9	534 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	PLAC1	Q9HBJ0	212 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	SAYSD1	Q9NPB0	183 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	SLC17A6	Q9P2U8	582 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	SUCO	Q9UBS9	1254 aa	Known RBP	13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	ERRFI1	Q9UJM3	462 aa	Predicted RBP	13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	SH2B3	Q9UQQ2	575 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	NTNG1	Q9Y2I2	539 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	SNX24	Q9Y343	169 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	PSAT1	Q9Y617	370 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	SCN2A	Q99250	2005 aa		13.27	□□□□□ -0.29
TPM1-223	ENST00000560445	CCDC189	A1A4V9	331 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445		A8MUI8	341 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	E2F3	O00716	465 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	CLGN	O14967	610 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	PRMT3	O60678	531 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	JRK	O75564	520 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	WDR47	O94967	919 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	SVIL	O95425	2214 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	WDPCP	O95876	746 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	ZNF888	P0CJ79	500 aa	Predicted RBP	13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	CD46	P15529	392 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	SPR	P35270	261 aa	Predicted RBP	13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	RHAG	Q02094	409 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	CKAP4	Q07065	602 aa	Known RBP	13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	LAPTM5	Q13571	262 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	USP10	Q14694	798 aa	Known RBP	13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	CATSPERE	Q5SY80	951 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	SULT1C3	Q6IMI6	304 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	H3F3C	Q6NXT2	135 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	TMIGD1	Q6UXZ0	262 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	PRSS41	Q7RTY9	318 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	PDSS2	Q86YH6	399 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	KLHDC8A	Q8IYD2	350 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	SPATA4	Q8NEY3	305 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	GAL3ST3	Q96A11	431 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	PWWP2A	Q96N64	755 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	MACROD1	Q9BQ69	325 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	EFCAB11	Q9BUY7	163 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	NPL	Q9BXD5	320 aa	Predicted RBP	13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	SLC6A16	Q9GZN6	736 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	RUBCNL	Q9H714	662 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	NT5DC2	Q9H857	520 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	PRDM9	Q9NQV7	894 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	WWOX	Q9NZC7	414 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	OSGIN2	Q9Y236	505 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	SLC22A14	Q9Y267	594 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	MMACHC	Q9Y4U1	282 aa		13.26	□□□□□ -0.29
TPM1-223	ENST00000560445	ZNF860	A6NHJ4	632 aa		13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	ANKDD1B	A6NHY2	528 aa		13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	CDC7	O00311	574 aa		13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	CLDN4	O14493	209 aa		13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	CHST10	O43529	356 aa		13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	STS	P08842	583 aa		13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	C1GALT1C1L	P0DN25	315 aa		13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	ETF1	P62495	437 aa	Known RBP	13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	FASTKD3	Q14CZ7	662 aa	Known RBP	13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	TERF2	Q15554	542 aa		13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	TGFBI	Q15582	683 aa		13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	TSN	Q15631	228 aa	Known RBP	13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	HIST2H2AC	Q16777	129 aa	Predicted RBP	13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	HIST2H2AA3	Q6FI13	130 aa		13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	GFRAL	Q6UXV0	394 aa		13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	LANCL3	Q6ZV70	420 aa		13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	GPSM1	Q86YR5	675 aa		13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	SLC34A3	Q8N130	599 aa		13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	CATSPER1	Q8NEC5	780 aa		13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	SRFBP1	Q8NEF9	429 aa	Known RBP	13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	UTP15	Q8TED0	518 aa	Known RBP	13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	UBE2E3	Q969T4	207 aa		13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	PTCHD1	Q96NR3	888 aa		13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	GPR22	Q99680	433 aa		13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	RBBP8	Q99708	897 aa		13.25	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms