RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 HTRA2O43464 458 aaPredicted RBP4.92□□□□□ -1.62
TMEM260-210ENST00000556422 NOBOXO60393 691 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 ATG13O75143 517 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 ECI2O75521 394 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 SRP72O76094 671 aaKnown RBP4.92□□□□□ -1.62
TMEM260-210ENST00000556422 FUCA1P04066 466 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 JUNDP17535 347 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 NELFEP18615 380 aaKnown RBP4.92□□□□□ -1.62
TMEM260-210ENST00000556422 XRCC1P18887 633 aaPredicted RBP4.92□□□□□ -1.62
TMEM260-210ENST00000556422 SLC5A2P31639 672 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 CD70P32970 193 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 RYKP34925 604 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 RFC2P35250 354 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 MSX2P35548 267 aaPredicted RBP4.92□□□□□ -1.62
TMEM260-210ENST00000556422 DGKGP49619 791 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 AGTR2P50052 363 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 CLCN7P51798 805 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 SPCS3P61009 180 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 RAB4BP61018 213 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 RHOAP61586 193 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 HNRNPKP61978 463 aaKnown RBP eCLIP4.92□□□□□ -1.62
TMEM260-210ENST00000556422 FOXK2Q01167 660 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 LMAN2Q12907 356 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 CDH18Q13634 790 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 SWI5Q1ZZU3 235 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 RUNDC3AQ59EK9 446 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 RSBN1Q5VWQ0 802 aaPredicted RBP4.92□□□□□ -1.62
TMEM260-210ENST00000556422 C8orf82Q6P1X6 216 aaPredicted RBP4.92□□□□□ -1.62
TMEM260-210ENST00000556422 ERN2Q76MJ5 926 aaKnown RBP4.92□□□□□ -1.62
TMEM260-210ENST00000556422 MCEMP1Q8IX19 187 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 MINDY1Q8N5J2 469 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 DENND6BQ8NEG7 585 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 PROX1Q92786 737 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 EXOSC8Q96B26 276 aaKnown RBP4.92□□□□□ -1.62
TMEM260-210ENST00000556422 C19orf60Q96EN9 201 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 FAM83CQ9BQN1 747 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 C1QTNF7Q9BXJ2 289 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 SMG9Q9H0W8 520 aaKnown RBP4.92□□□□□ -1.62
TMEM260-210ENST00000556422 RANBP3Q9H6Z4 567 aaPredicted RBP4.92□□□□□ -1.62
TMEM260-210ENST00000556422 IFT46Q9NQC8 304 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 TLR9Q9NR96 1032 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 PRPF19Q9UMS4 504 aaKnown RBP4.92□□□□□ -1.62
TMEM260-210ENST00000556422 CCL26Q9Y258 94 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 FNDC3AQ9Y2H6 1198 aaKnown RBP4.92□□□□□ -1.62
TMEM260-210ENST00000556422 PCDHGA7Q9Y5G6 932 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 A0A1W2PRU2 124 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 NPEPPSL1A6NEC2 478 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 ACOT8O14734 319 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 BET1O15155 118 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 FKBP6O75344 327 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 SLITRK5O94991 958 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 TIMP1P01033 207 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 STSP08842 583 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 PRR35P0CG20 571 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 CTSAP10619 480 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 PRPS2P11908 318 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 PKMP14618 531 aaKnown RBP4.92□□□□□ -1.62
TMEM260-210ENST00000556422 CTPS1P17812 591 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 PFKLP17858 780 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 CYP2A7P20853 494 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 HOXA6P31267 233 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 TTPAP49638 278 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 ENTPD1P49961 510 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 RIDAP52758 137 aaKnown RBP4.92□□□□□ -1.62
TMEM260-210ENST00000556422 PKNOX1P55347 436 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 YBX1P67809 324 aaKnown RBP4.92□□□□□ -1.62
TMEM260-210ENST00000556422 SLC7A9P82251 487 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 ILF2Q12905 390 aaKnown RBP4.92□□□□□ -1.62
TMEM260-210ENST00000556422 ZNF267Q14586 743 aaPredicted RBP4.92□□□□□ -1.62
TMEM260-210ENST00000556422 HTR3DQ70Z44 454 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 DHDDSQ86SQ9 333 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 SATL1Q86VE3 508 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 NLRP8Q86W28 1048 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 METTL4Q8N3J2 472 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 CPXM2Q8N436 756 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 PRR18Q8N4B5 295 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 RNF148Q8N7C7 305 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 CELF2-AS1Q8N7Q2 184 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 EEF1AKMT1Q8WVE0 214 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 FIG4Q92562 907 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 KCNJ9Q92806 393 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 SLC45A3Q96JT2 553 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 ZNF184Q99676 751 aaPredicted RBP4.92□□□□□ -1.62
TMEM260-210ENST00000556422 SLC25A23Q9BV35 468 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 TMEM106CQ9BVX2 250 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 PAPOLGQ9BWT3 736 aaKnown RBP4.92□□□□□ -1.62
TMEM260-210ENST00000556422 OSBPL6Q9BZF3 934 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 OR51B6Q9H340 312 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 WDR41Q9HAD4 459 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 MAGEE1Q9HCI5 957 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 PCDHB16Q9NRJ7 776 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 CACNA2D2Q9NY47 1150 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 CCDC167Q9P0B6 97 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 SARDHQ9UL12 918 aa4.92□□□□□ -1.62
TMEM260-210ENST00000556422 SAMHD1Q9Y3Z3 626 aaKnown RBP4.92□□□□□ -1.62
TMEM260-210ENST00000556422 ZFC3H1O60293 1989 aaKnown RBP4.92□□□□□ -1.62
TMEM260-210ENST00000556422 A0A0J9YYE9 177 aa4.91□□□□□ -1.62
TMEM260-210ENST00000556422 hCG_1807616A0A1W2PRN6 198 aa4.91□□□□□ -1.62
TMEM260-210ENST00000556422 A8MV72 311 aaPredicted RBP4.91□□□□□ -1.62
TMEM260-210ENST00000556422 PIP5K1BO14986 540 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms