RNA–Protein interactions for RNA: ENST00000555301.1

CHD8-208, Transcript of chromodomain helicase DNA binding protein 8, human

TSL 2

Gene CHD8, Length 918 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD8-208	ENST00000555301	TRAF6	Q9Y4K3	522 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301	TIMM22	Q9Y584	194 aa		13.59	□□□□□ -0.23
CHD8-208	ENST00000555301		A0A088AWK7	358 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	SERTM1	A2A2V5	107 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	MAGEB17	A8MXT2	336 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	MEN1	O00255	615 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	ITM2A	O43736	263 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	LYPLA1	O75608	230 aa	Predicted RBP	13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	TBX6	O95947	436 aa	Predicted RBP	13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	TGFB1	P01137	390 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	PDYN	P01213	254 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	PIM1	P11309	404 aa	Predicted RBP	13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	ALOX12	P18054	663 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	ZNF10	P21506	573 aa	Predicted RBP	13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	AGXT	P21549	392 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	HNRNPH1	P31943	449 aa	Known RBP	13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	ARRB2	P32121	409 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	RORA	P35398	523 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	AVPR1B	P47901	424 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	ARFIP1	P53367	373 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	FOXA1	P55317	472 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	RPS13	P62277	151 aa	Known RBP	13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	ABHD18	Q0P651	414 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	CSTF3	Q12996	717 aa	Known RBP	13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	CUL3	Q13618	768 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	SGO1	Q5FBB7	561 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	DEPDC1	Q5TB30	811 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	KHDRBS2	Q5VWX1	349 aa	Known RBP	13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	CES4A	Q5XG92	561 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	KANK2	Q63ZY3	851 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	TRIM40	Q6P9F5	258 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	DSEL	Q8IZU8	1212 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	NLGN4X	Q8N0W4	816 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	AFAP1L2	Q8N4X5	818 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	NLGN4Y	Q8NFZ3	816 aa	Predicted RBP	13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	OR2L5	Q8NG80	312 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	FAM76A	Q8TAV0	307 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	ZCCHC10	Q8TBK6	192 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	UTP15	Q8TED0	518 aa	Known RBP	13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	MS4A6E	Q96DS6	147 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	FAR2	Q96K12	515 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	GBP5	Q96PP8	586 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	SERPINI1	Q99574	410 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	C17orf62	Q9BQA9	187 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	ROGDI	Q9GZN7	287 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	CCDC86	Q9H6F5	360 aa	Known RBP	13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	TNFRSF12A	Q9NP84	129 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301	PADI1	Q9ULC6	663 aa		13.58	□□□□□ -0.24
CHD8-208	ENST00000555301		H0YIG0	161 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	ERI3	O43414	337 aa	Known RBP	13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	RAD1	O60671	282 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	SNN	O75324	88 aa	Predicted RBP	13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	NSA2	O95478	260 aa	Known RBP	13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	ZNF888	P0CJ79	500 aa	Predicted RBP	13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	SMIM10L1	P0DMW3	83 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	LIPC	P11150	499 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	TSFM	P43897	325 aa	Known RBP	13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	RAP1GDS1	P52306	607 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	DCD	P81605	110 aa	Known RBP	13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	ABRAXAS2	Q15018	415 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	TCHHL1	Q5QJ38	904 aa	Predicted RBP	13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	C1orf189	Q5VU69	101 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	CLEC6A	Q6EIG7	209 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	RNF165	Q6ZSG1	346 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	ZFAND4	Q86XD8	727 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	GALNT6	Q8NCL4	622 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	CKAP2	Q8WWK9	683 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	GATA6	Q92908	595 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	FGF11	Q92914	225 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	SMIM10	Q96HG1	83 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	MAGEB18	Q96M61	343 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	KCNC2	Q96PR1	638 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	F2RL3	Q96RI0	385 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	SORT1	Q99523	831 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	CCT7	Q99832	543 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	C20orf27	Q9GZN8	174 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	OR51B5	Q9H339	312 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	KLHL31	Q9H511	634 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	CLK4	Q9HAZ1	481 aa	Known RBP	13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	ZNF304	Q9HCX3	659 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	LHX9	Q9NQ69	397 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	PFDN4	Q9NQP4	134 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	FARSB	Q9NSD9	589 aa	Known RBP	13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	ZDHHC2	Q9UIJ5	367 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	HAO1	Q9UJM8	370 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	DNAJC15	Q9Y5T4	150 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	PTPRB	P23467	1997 aa		13.57	□□□□□ -0.24
CHD8-208	ENST00000555301	ADAMTS20	P59510	1910 aa		13.56	□□□□□ -0.24
CHD8-208	ENST00000555301	SPTBN4	Q9H254	2564 aa		13.56	□□□□□ -0.24
CHD8-208	ENST00000555301	ANKRD12	Q6UB98	2062 aa		13.56	□□□□□ -0.24
CHD8-208	ENST00000555301		A0A0A6YYC8	382 aa	Predicted RBP	13.56	□□□□□ -0.24
CHD8-208	ENST00000555301		I3L1I5	382 aa	Predicted RBP	13.56	□□□□□ -0.24
CHD8-208	ENST00000555301	FOXS1	O43638	330 aa		13.56	□□□□□ -0.24
CHD8-208	ENST00000555301	GALR3	O60755	368 aa	Predicted RBP	13.56	□□□□□ -0.24
CHD8-208	ENST00000555301	SEMA3D	O95025	777 aa		13.56	□□□□□ -0.24
CHD8-208	ENST00000555301	MED26	O95402	600 aa		13.56	□□□□□ -0.24
CHD8-208	ENST00000555301	ONECUT2	O95948	504 aa		13.56	□□□□□ -0.24
CHD8-208	ENST00000555301	IL1RN	P18510	177 aa		13.56	□□□□□ -0.24
CHD8-208	ENST00000555301	SERPINB3	P29508	390 aa		13.56	□□□□□ -0.24
CHD8-208	ENST00000555301	HTR6	P50406	440 aa		13.56	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms