RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-203ENST00000547825 C12orf71A8MTZ7 269 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 J3KR12 359 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 K7ESF4 209 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 AQP9O43315 295 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 SERPINB7O75635 380 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 CKMT1AP12532 417 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 PKMP14618 531 aaKnown RBP5.3□□□□□ -1.56
LIMA1-203ENST00000547825 LPOP22079 712 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-203ENST00000547825 SLC6A2P23975 617 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 LTBRP36941 435 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 KIR3DL1P43629 444 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 GSTM5P46439 218 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 GLUD2P49448 558 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 ACADVLP49748 655 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 MAPK12P53778 367 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 TXNL4AP83876 142 aaKnown RBP5.3□□□□□ -1.56
LIMA1-203ENST00000547825 SMN1Q16637 294 aaKnown RBP5.3□□□□□ -1.56
LIMA1-203ENST00000547825 TSTQ16762 297 aaKnown RBP5.3□□□□□ -1.56
LIMA1-203ENST00000547825 ALFQ53S48 1182 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 PAGE3Q5JUK9 113 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 RBM48Q5RL73 367 aaKnown RBP5.3□□□□□ -1.56
LIMA1-203ENST00000547825 CES5AQ6NT32 575 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 SPATA19Q7Z5L4 167 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 TMEM151AQ8N4L1 468 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF671Q8TAW3 534 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 C11orf24Q96F05 449 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-203ENST00000547825 PCED1BQ96HM7 432 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 ZFP3Q96NJ6 502 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 MTERF1Q99551 399 aaKnown RBP5.3□□□□□ -1.56
LIMA1-203ENST00000547825 POLR2J2Q9GZM3 115 aaKnown RBP5.3□□□□□ -1.56
LIMA1-203ENST00000547825 TNFRSF12AQ9NP84 129 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 RPS6KA6Q9UK32 745 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 EDARQ9UNE0 448 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 ING4Q9UNL4 249 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 GTF2A1LQ9UNN4 478 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 RNF6Q9Y252 685 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 UGT2A1Q9Y4X1 527 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 PEX16Q9Y5Y5 336 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 SESN1Q9Y6P5 492 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 FAM172BPA6NC97 362 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 I6L893 689 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 M0R129 80 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 ADAM23O75077 832 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 GUCY1B2O75343 617 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 TULP3O75386 442 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 ECI2O75521 394 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 KLHL18O94889 574 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 TOXO94900 526 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 RASAL1O95294 804 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 GLUD1P00367 558 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 CHRNA1P02708 482 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 FABP3P05413 133 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 C8BP07358 591 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 FHP07954 510 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 PRSS56P0CW18 603 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 UROSP10746 265 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 HTR2BP41595 481 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 OR1E2P47887 323 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 SLC11A2P49281 568 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 SLC26A2P50443 739 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 ATP6V0D1P61421 351 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 MTA1Q13330 715 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 RTP2Q5QGT7 225 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 GLB1LQ6UWU2 654 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 RASSF6Q6ZTQ3 369 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 CACUL1Q86Y37 369 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 TICAM1Q8IUC6 712 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 CADM3Q8N126 398 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 PCSK9Q8NBP7 692 aaKnown RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 PJA1Q8NG27 643 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 OR7D4Q8NG98 312 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 HMCESQ96FZ2 354 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 MSANTD3Q96H12 275 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 FOPNLQ96NB1 174 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 ZSCAN5AQ9BUG6 496 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 IL37Q9NZH6 218 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 UBA2Q9UBT2 640 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 MYO16Q9Y6X6 1858 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 TMEM265A0A087WTH1 108 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 A0A0U1RQS6 177 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 PRR23AA6NEV1 266 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 AP3D1O14617 1153 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 ACOX3O15254 700 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 SOX14O95416 240 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 ANXA5P08758 320 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 CLTBP09497 229 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 MYF6P23409 242 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 CPT1AP50416 773 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 GNG2P59768 71 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 LILRA4P59901 499 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 MBTD1Q05BQ5 628 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 NIPAL4Q0D2K0 466 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 ABRQ12979 859 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 RAPSNQ13702 412 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 GTDC1Q4AE62 458 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 CTXN3Q4LDR2 81 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 TMEM240Q5SV17 173 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 CXorf57Q6NSI4 855 aaKnown RBP5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms