RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 CDC40O60508 579 aaKnown RBP eCLIP16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 AVILO75366 819 aa16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 HOXD4P09016 255 aaPredicted RBP16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 SLC35G6P0C7Q6 338 aa16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 ENO3P13929 434 aaPredicted RBP16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 CD99P14209 185 aa16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 TPSB2P20231 275 aa16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 IST1P53990 364 aa16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 BTG2P78543 158 aa16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 KIF5AQ12840 1032 aa16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 AKAP6Q13023 2319 aa16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 TPSAB1Q15661 275 aa16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 CCNG2Q16589 344 aa16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 ZNF470Q6ECI4 717 aa16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 TMEM211Q6ICI0 200 aa16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 TMEM200AQ86VY9 491 aa16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 TMEM139Q8IV31 216 aa16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 CPNE9Q8IYJ1 553 aa16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 MFSD9Q8NBP5 474 aa16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 TMEM125Q96AQ2 219 aa16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 GPR21Q99679 349 aa16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 ZNF559Q9BR84 538 aa16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 DESI2Q9BSY9 194 aa16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 FAM129AQ9BZQ8 928 aa16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 TP63Q9H3D4 680 aaPredicted RBP16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 FBXO6Q9NRD1 293 aaPredicted RBP16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 ADAMTS6Q9UKP5 1117 aa16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 VPS9D1Q9Y2B5 631 aa16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 KLF13Q9Y2Y9 288 aaPredicted RBP16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 NCKAP5O14513 1909 aa16.66■□□□□ 0.26
CLSTN3-214ENST00000542663 ANKHD1Q8IWZ3 2542 aaKnown RBP16.65■□□□□ 0.26
CLSTN3-214ENST00000542663 SAGE2PA6NJ88 616 aa16.65■□□□□ 0.26
CLSTN3-214ENST00000542663 CHST10O43529 356 aa16.65■□□□□ 0.26
CLSTN3-214ENST00000542663 PEX1O43933 1283 aa16.65■□□□□ 0.26
CLSTN3-214ENST00000542663 B4GALT2O60909 372 aa16.65■□□□□ 0.26
CLSTN3-214ENST00000542663 CDH1P12830 882 aa16.65■□□□□ 0.26
CLSTN3-214ENST00000542663 CTBP1Q13363 440 aa16.65■□□□□ 0.26
CLSTN3-214ENST00000542663 HERC3Q15034 1050 aa16.65■□□□□ 0.26
CLSTN3-214ENST00000542663 DRICH1Q6PGQ1 229 aaPredicted RBP16.65■□□□□ 0.26
CLSTN3-214ENST00000542663 C4orf22Q6V702 233 aa16.65■□□□□ 0.26
CLSTN3-214ENST00000542663 C17orf64Q86WR6 236 aa16.65■□□□□ 0.26
CLSTN3-214ENST00000542663 CCDC71Q8IV32 467 aaPredicted RBP16.65■□□□□ 0.26
CLSTN3-214ENST00000542663 ZFP62Q8NB50 900 aaPredicted RBP16.65■□□□□ 0.26
CLSTN3-214ENST00000542663 OR52N2Q8NGI0 321 aa16.65■□□□□ 0.26
CLSTN3-214ENST00000542663 RND1Q92730 232 aa16.65■□□□□ 0.26
CLSTN3-214ENST00000542663 PCBD2Q9H0N5 130 aa16.65■□□□□ 0.26
CLSTN3-214ENST00000542663 ATG10Q9H0Y0 220 aa16.65■□□□□ 0.26
CLSTN3-214ENST00000542663 CXXC4Q9H2H0 198 aa16.65■□□□□ 0.26
CLSTN3-214ENST00000542663 KCNJ16Q9NPI9 418 aa16.65■□□□□ 0.26
CLSTN3-214ENST00000542663 KCNN3Q9UGI6 736 aa16.65■□□□□ 0.26
CLSTN3-214ENST00000542663 PDE10AQ9Y233 779 aa16.65■□□□□ 0.26
CLSTN3-214ENST00000542663 FAM221AA4D161 298 aa16.64■□□□□ 0.25
CLSTN3-214ENST00000542663 CTAGE9A4FU28 777 aa16.64■□□□□ 0.25
CLSTN3-214ENST00000542663 KLRC4-KLRK1H3BQV0 150 aa16.64■□□□□ 0.25
CLSTN3-214ENST00000542663 PRMT3O60678 531 aa16.64■□□□□ 0.25
CLSTN3-214ENST00000542663 NPPBP16860 134 aa16.64■□□□□ 0.25
CLSTN3-214ENST00000542663 CDK16Q00536 496 aa16.64■□□□□ 0.25
CLSTN3-214ENST00000542663 MEF2AQ02078 507 aaPredicted RBP16.64■□□□□ 0.25
CLSTN3-214ENST00000542663 DEFB134Q4QY38 66 aa16.64■□□□□ 0.25
CLSTN3-214ENST00000542663 AGTRAPQ6RW13 159 aa16.64■□□□□ 0.25
CLSTN3-214ENST00000542663 QSOX2Q6ZRP7 698 aa16.64■□□□□ 0.25
CLSTN3-214ENST00000542663 MDGA2Q7Z553 956 aa16.64■□□□□ 0.25
CLSTN3-214ENST00000542663 CYP4X1Q8N118 509 aa16.64■□□□□ 0.25
CLSTN3-214ENST00000542663 APCDD1LQ8NCL9 501 aa16.64■□□□□ 0.25
CLSTN3-214ENST00000542663 SEC16BQ96JE7 1060 aa16.64■□□□□ 0.25
CLSTN3-214ENST00000542663 PTCHD1Q96NR3 888 aa16.64■□□□□ 0.25
CLSTN3-214ENST00000542663 SARGQ9BW04 601 aa16.64■□□□□ 0.25
CLSTN3-214ENST00000542663 SGPP1Q9BX95 441 aa16.64■□□□□ 0.25
CLSTN3-214ENST00000542663 IGKV3D-11A0A0A0MRZ8 115 aa16.63■□□□□ 0.25
CLSTN3-214ENST00000542663 TCRBV16S1A1N1A0A5B0 115 aa16.63■□□□□ 0.25
CLSTN3-214ENST00000542663 FCHO1O14526 889 aa16.63■□□□□ 0.25
CLSTN3-214ENST00000542663 NDUFS4O43181 175 aa16.63■□□□□ 0.25
CLSTN3-214ENST00000542663 PDE9AO76083 593 aa16.63■□□□□ 0.25
CLSTN3-214ENST00000542663 ALOX12P18054 663 aa16.63■□□□□ 0.25
CLSTN3-214ENST00000542663 PAMP19021 973 aa16.63■□□□□ 0.25
CLSTN3-214ENST00000542663 PTMSP20962 102 aa16.63■□□□□ 0.25
CLSTN3-214ENST00000542663 MAOAP21397 527 aa16.63■□□□□ 0.25
CLSTN3-214ENST00000542663 JAK1P23458 1154 aa16.63■□□□□ 0.25
CLSTN3-214ENST00000542663 NUP107P57740 925 aa16.63■□□□□ 0.25
CLSTN3-214ENST00000542663 GPR85P60893 370 aa16.63■□□□□ 0.25
CLSTN3-214ENST00000542663 NAE1Q13564 534 aa16.63■□□□□ 0.25
CLSTN3-214ENST00000542663 DHX34Q14147 1143 aaKnown RBP16.63■□□□□ 0.25
CLSTN3-214ENST00000542663 LCTLQ6UWM7 567 aa16.63■□□□□ 0.25
CLSTN3-214ENST00000542663 CAND1Q86VP6 1230 aaKnown RBP16.63■□□□□ 0.25
CLSTN3-214ENST00000542663 MMP21Q8N119 569 aa16.63■□□□□ 0.25
CLSTN3-214ENST00000542663 TSGA10Q9BZW7 698 aa16.63■□□□□ 0.25
CLSTN3-214ENST00000542663 VPS13CQ709C8 3753 aa16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 ZCWPW2A0A1B0GU75 182 aa16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 FAM237BA0A1B0GVD1 139 aa16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 CEP104O60308 925 aa16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 GRK3P35626 688 aa16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 SLC1A2P43004 574 aa16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 KCNJ1P48048 391 aa16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 ZNF75DP51815 510 aa16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 TERF1P54274 439 aa16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 TIAL1Q01085 375 aaKnown RBP eCLIP16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 PMPCAQ10713 525 aa16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 PWP1Q13610 501 aa16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 SKOR2Q2VWA4 1001 aaPredicted RBP16.62■□□□□ 0.25
CLSTN3-214ENST00000542663 CES4AQ5XG92 561 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms