RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 MTIF3Q9H2K0 278 aaKnown RBP2.37□□□□□ -2.03
CD44-238ENST00000534296 TMEM206Q9H813 350 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 C10orf88Q9H8K7 445 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 AKIRIN1Q9H9L7 192 aaPredicted RBP2.37□□□□□ -2.03
CD44-238ENST00000534296 B3GAT2Q9NPZ5 323 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 NDE1Q9NXR1 346 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 POLKQ9UBT6 870 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 ASIC3Q9UHC3 531 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 MUTYHQ9UIF7 546 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 AGTPBP1Q9UPW5 1226 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 PPP2R2CQ9Y2T4 447 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 ANGPTL3Q9Y5C1 460 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 NOTCH3Q9UM47 2321 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 KIAA1210Q9ULL0 1709 aa2.37□□□□□ -2.03
CD44-238ENST00000534296 ILVBLA1L0T0 632 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 ASB14A6NK59 587 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 FPGTO14772 594 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 TFECO14948 347 aaPredicted RBP2.36□□□□□ -2.03
CD44-238ENST00000534296 PGRMC2O15173 223 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 TEX28O15482 410 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 SCO2O43819 266 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 IDH3BO43837 385 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 DDHD2O94830 711 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 BAG3O95817 575 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 HPRP00739 348 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 GH1P01241 217 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 SBK2P0C263 348 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 EEF2P13639 858 aaKnown RBP2.36□□□□□ -2.03
CD44-238ENST00000534296 GATA1P15976 413 aaPredicted RBP2.36□□□□□ -2.03
CD44-238ENST00000534296 LBPP18428 481 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 CTNNA2P26232 953 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 SHC1P29353 583 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 IER3P46695 156 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 DSCR10P59022 87 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 DCDC1P59894 354 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 ARF5P84085 180 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 GCNT1Q02742 428 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 UBXN1Q04323 297 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 RIGQ13278 110 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 NFE2L1Q14494 772 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 MORF4L2Q15014 288 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 KBTBD12Q3ZCT8 623 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 GLIPR1L2Q4G1C9 344 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 IQCCQ4KMZ1 466 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 ZNF542PQ5EBM4 170 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 ZRANB3Q5FWF4 1079 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 ZNF789Q5FWF6 425 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 SLC10A5Q5PT55 438 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 SPINK14Q6IE38 97 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 GBP6Q6ZN66 633 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 BTN2A1Q7KYR7 527 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 PRUNE1Q86TP1 453 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 GPC2Q8N158 579 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 ELMOD1Q8N336 334 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 CCDC185Q8N715 623 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 SPC24Q8NBT2 197 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 PIK3R3Q92569 461 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 GTF3AQ92664 365 aaKnown RBP2.36□□□□□ -2.03
CD44-238ENST00000534296 RASL10AQ92737 203 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 CORO2AQ92828 525 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 AP2M1Q96CW1 435 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 ZNF486Q96H40 463 aaPredicted RBP2.36□□□□□ -2.03
CD44-238ENST00000534296 GDAP1L1Q96MZ0 367 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 LGMNQ99538 433 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 CCDC3Q9BQI4 270 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 SLC5A7Q9GZV3 580 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 THAP2Q9H0W7 228 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 MTHFD2LQ9H903 347 aaPredicted RBP2.36□□□□□ -2.03
CD44-238ENST00000534296 SP140LQ9H930 580 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 RNPEPL1Q9HAU8 725 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 IL1RAPL2Q9NP60 686 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 UBE2TQ9NPD8 197 aaPredicted RBP2.36□□□□□ -2.03
CD44-238ENST00000534296 PANK4Q9NVE7 773 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 TBC1D13Q9NVG8 400 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 DNAJC17Q9NVM6 304 aaKnown RBP2.36□□□□□ -2.03
CD44-238ENST00000534296 HACD3Q9P035 362 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 THEGQ9P2T0 379 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 MTRRQ9UBK8 725 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 DNAJB9Q9UBS3 223 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 DBF4Q9UBU7 674 aaPredicted RBP2.36□□□□□ -2.03
CD44-238ENST00000534296 LNPEPQ9UIQ6 1025 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 PRDM4Q9UKN5 801 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 KLK13Q9UKR3 277 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 ELF5Q9UKW6 265 aaPredicted RBP2.36□□□□□ -2.03
CD44-238ENST00000534296 CACNA1FO60840 1977 aa2.36□□□□□ -2.03
CD44-238ENST00000534296 COL5A2P05997 1499 aaPredicted RBP2.35□□□□□ -2.03
CD44-238ENST00000534296 LOC105371242A0A075B767 164 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 TRBV4-1A0A0J9YWV2 114 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 C5orf52A6NGY3 159 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 TMCO5BA8MYB1 307 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 SNURFLB1AK76 121 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 PRSS46E5RG02 174 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 SLC30A4O14863 429 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 CYTIPO60759 359 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 PRAF2O60831 178 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 HSF2BPO75031 334 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 ATP9AO75110 1047 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 ATP6V1G1O75348 118 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 BAG2O95816 211 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 ZSCAN5DPP0CG00 497 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms