RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 MRGPREQ86SM8 312 aa18.81■□□□□ 0.6
CPSF1-209ENST00000532725 MREGQ8N565 214 aa18.81■□□□□ 0.6
CPSF1-209ENST00000532725 OR51Q1Q8NH59 317 aa18.81■□□□□ 0.6
CPSF1-209ENST00000532725 TRIM55Q9BYV6 548 aa18.81■□□□□ 0.6
CPSF1-209ENST00000532725 SEMA4CQ9C0C4 833 aa18.81■□□□□ 0.6
CPSF1-209ENST00000532725 ING2Q9H160 280 aa18.81■□□□□ 0.6
CPSF1-209ENST00000532725 ADNPQ9H2P0 1102 aa18.81■□□□□ 0.6
CPSF1-209ENST00000532725 SEMA3GQ9NS98 782 aa18.81■□□□□ 0.6
CPSF1-209ENST00000532725 PCSK5Q92824 1860 aa18.8■□□□□ 0.6
CPSF1-209ENST00000532725 URADA6NGE7 173 aa18.8■□□□□ 0.6
CPSF1-209ENST00000532725 ANKDD1BA6NHY2 528 aa18.8■□□□□ 0.6
CPSF1-209ENST00000532725 ARGFXA6NJG6 315 aa18.8■□□□□ 0.6
CPSF1-209ENST00000532725 BMP10O95393 424 aa18.8■□□□□ 0.6
CPSF1-209ENST00000532725 B3GALT4O96024 378 aa18.8■□□□□ 0.6
CPSF1-209ENST00000532725 IGHEP01854 428 aa18.8■□□□□ 0.6
CPSF1-209ENST00000532725 TUBBP07437 444 aa18.8■□□□□ 0.6
CPSF1-209ENST00000532725 ZNF888P0CJ79 500 aaPredicted RBP18.8■□□□□ 0.6
CPSF1-209ENST00000532725 EEF1DP29692 281 aaKnown RBP18.8■□□□□ 0.6
CPSF1-209ENST00000532725 HNF4AP41235 474 aa18.8■□□□□ 0.6
CPSF1-209ENST00000532725 DEFB134Q4QY38 66 aa18.8■□□□□ 0.6
CPSF1-209ENST00000532725 LIPJQ5W064 366 aa18.8■□□□□ 0.6
CPSF1-209ENST00000532725 ADNP2Q6IQ32 1131 aa18.8■□□□□ 0.6
CPSF1-209ENST00000532725 MED25Q71SY5 747 aa18.8■□□□□ 0.6
CPSF1-209ENST00000532725 ABHD13Q7L211 337 aa18.8■□□□□ 0.6
CPSF1-209ENST00000532725 ZC3H7AQ8IWR0 971 aaKnown RBP18.8■□□□□ 0.6
CPSF1-209ENST00000532725 LAS2Q8IYD9 372 aa18.8■□□□□ 0.6
CPSF1-209ENST00000532725 PRSS58Q8IYP2 241 aa18.8■□□□□ 0.6
CPSF1-209ENST00000532725 TMEM102Q8N9M5 508 aaPredicted RBP18.8■□□□□ 0.6
CPSF1-209ENST00000532725 IPPKQ9H8X2 491 aa18.8■□□□□ 0.6
CPSF1-209ENST00000532725 P4HTMQ9NXG6 502 aa18.8■□□□□ 0.6
CPSF1-209ENST00000532725 TUBD1Q9UJT1 453 aa18.8■□□□□ 0.6
CPSF1-209ENST00000532725 C3orf18Q9UK00 162 aa18.8■□□□□ 0.6
CPSF1-209ENST00000532725 HS3ST3B1Q9Y662 390 aa18.8■□□□□ 0.6
CPSF1-209ENST00000532725 KALRNO60229 2985 aa18.79■□□□□ 0.6
CPSF1-209ENST00000532725 SMG1Q96Q15 3661 aaKnown RBP18.79■□□□□ 0.6
CPSF1-209ENST00000532725 TLDC2A0PJX2 215 aa18.79■□□□□ 0.6
CPSF1-209ENST00000532725 A8MT66 165 aa18.79■□□□□ 0.6
CPSF1-209ENST00000532725 C4orf51C9J302 202 aa18.79■□□□□ 0.6
CPSF1-209ENST00000532725 SOCS6O14544 535 aa18.79■□□□□ 0.6
CPSF1-209ENST00000532725 RDH16O75452 317 aa18.79■□□□□ 0.6
CPSF1-209ENST00000532725 KRT15P19012 456 aa18.79■□□□□ 0.6
CPSF1-209ENST00000532725 HNRNPH1P31943 449 aaKnown RBP18.79■□□□□ 0.6
CPSF1-209ENST00000532725 PIK3CGP48736 1102 aa18.79■□□□□ 0.6
CPSF1-209ENST00000532725 RAB8AP61006 207 aa18.79■□□□□ 0.6
CPSF1-209ENST00000532725 STXBP1P61764 594 aaKnown RBP18.79■□□□□ 0.6
CPSF1-209ENST00000532725 KCNAB2Q13303 367 aa18.79■□□□□ 0.6
CPSF1-209ENST00000532725 ADPRMQ3LIE5 342 aa18.79■□□□□ 0.6
CPSF1-209ENST00000532725 TOR1AIP1Q5JTV8 583 aa18.79■□□□□ 0.6
CPSF1-209ENST00000532725 CPZQ66K79 652 aa18.79■□□□□ 0.6
CPSF1-209ENST00000532725 GRHL2Q6ISB3 625 aa18.79■□□□□ 0.6
CPSF1-209ENST00000532725 NIPAL1Q6NVV3 410 aa18.79■□□□□ 0.6
CPSF1-209ENST00000532725 MED27Q6P2C8 311 aa18.79■□□□□ 0.6
CPSF1-209ENST00000532725 KIRREL2Q6UWL6 708 aa18.79■□□□□ 0.6
CPSF1-209ENST00000532725 ZNF473Q8WTR7 871 aaKnown RBP18.79■□□□□ 0.6
CPSF1-209ENST00000532725 UBE2E3Q969T4 207 aa18.79■□□□□ 0.6
CPSF1-209ENST00000532725 MS4A6EQ96DS6 147 aa18.79■□□□□ 0.6
CPSF1-209ENST00000532725 CRB3Q9BUF7 120 aa18.79■□□□□ 0.6
CPSF1-209ENST00000532725 C1QTNF3Q9BXJ4 246 aa18.79■□□□□ 0.6
CPSF1-209ENST00000532725 ROPN1BQ9BZX4 212 aaPredicted RBP18.79■□□□□ 0.6
CPSF1-209ENST00000532725 NOL11Q9H8H0 719 aaKnown RBP18.79■□□□□ 0.6
CPSF1-209ENST00000532725 ROPN1Q9HAT0 212 aaPredicted RBP18.79■□□□□ 0.6
CPSF1-209ENST00000532725 CLK4Q9HAZ1 481 aaKnown RBP18.79■□□□□ 0.6
CPSF1-209ENST00000532725 ZBTB26Q9HCK0 441 aa18.79■□□□□ 0.6
CPSF1-209ENST00000532725 C14orf105Q9NVL8 296 aa18.79■□□□□ 0.6
CPSF1-209ENST00000532725 HCN3Q9P1Z3 774 aa18.79■□□□□ 0.6
CPSF1-209ENST00000532725 PCTPQ9UKL6 214 aa18.79■□□□□ 0.6
CPSF1-209ENST00000532725 TLN1Q9Y490 2541 aaKnown RBP18.78■□□□□ 0.6
CPSF1-209ENST00000532725 IDSB3KWA1 339 aa18.78■□□□□ 0.6
CPSF1-209ENST00000532725 AGPSO00116 658 aa18.78■□□□□ 0.6
CPSF1-209ENST00000532725 PEX12O00623 359 aa18.78■□□□□ 0.6
CPSF1-209ENST00000532725 OR7A17O14581 309 aa18.78■□□□□ 0.6
CPSF1-209ENST00000532725 DLX3O60479 287 aa18.78■□□□□ 0.6
CPSF1-209ENST00000532725 UGDHO60701 494 aa18.78■□□□□ 0.6
CPSF1-209ENST00000532725 JRKO75564 520 aa18.78■□□□□ 0.6
CPSF1-209ENST00000532725 DNAJB5O75953 348 aa18.78■□□□□ 0.6
CPSF1-209ENST00000532725 SFTPCP11686 197 aa18.78■□□□□ 0.6
CPSF1-209ENST00000532725 EFNA3P52797 238 aa18.78■□□□□ 0.6
CPSF1-209ENST00000532725 EMP2P54851 167 aa18.78■□□□□ 0.6
CPSF1-209ENST00000532725 CHAF1BQ13112 559 aa18.78■□□□□ 0.6
CPSF1-209ENST00000532725 L3MBTL4Q8NA19 623 aa18.78■□□□□ 0.6
CPSF1-209ENST00000532725 OR7G3Q8NG95 312 aa18.78■□□□□ 0.6
CPSF1-209ENST00000532725 OR5T3Q8NGG3 340 aa18.78■□□□□ 0.6
CPSF1-209ENST00000532725 CCT6BQ92526 530 aa18.78■□□□□ 0.6
CPSF1-209ENST00000532725 ABHD17AQ96GS6 310 aa18.78■□□□□ 0.6
CPSF1-209ENST00000532725 NSUN5Q96P11 429 aaKnown RBP18.78■□□□□ 0.6
CPSF1-209ENST00000532725 MESP1Q9BRJ9 268 aa18.78■□□□□ 0.6
CPSF1-209ENST00000532725 ACTR8Q9H981 624 aa18.78■□□□□ 0.6
CPSF1-209ENST00000532725 EMCNQ9ULC0 261 aa18.78■□□□□ 0.6
CPSF1-209ENST00000532725 TSC22D4Q9Y3Q8 395 aa18.78■□□□□ 0.6
CPSF1-209ENST00000532725 ZNF860A6NHJ4 632 aa18.77■□□□□ 0.6
CPSF1-209ENST00000532725 CHST10O43529 356 aa18.77■□□□□ 0.6
CPSF1-209ENST00000532725 RPS17P08708 135 aaKnown RBP18.77■□□□□ 0.6
CPSF1-209ENST00000532725 TAC1P20366 129 aa18.77■□□□□ 0.6
CPSF1-209ENST00000532725 IL10P22301 178 aa18.77■□□□□ 0.6
CPSF1-209ENST00000532725 CRHR1P34998 444 aa18.77■□□□□ 0.6
CPSF1-209ENST00000532725 XCR1P46094 333 aa18.77■□□□□ 0.6
CPSF1-209ENST00000532725 CCT5P48643 541 aa18.77■□□□□ 0.6
CPSF1-209ENST00000532725 CCL11P51671 97 aa18.77■□□□□ 0.6
CPSF1-209ENST00000532725 RRADP55042 308 aa18.77■□□□□ 0.6
CPSF1-209ENST00000532725 SLC18A2Q05940 514 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms