RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 TRMT6Q9UJA5 497 aaKnown RBP22.11■■□□□ 1.13
CPSF1-202ENST00000527827 E9PLN8 166 aa22.1■■□□□ 1.13
CPSF1-202ENST00000527827 CHST10O43529 356 aa22.1■■□□□ 1.13
CPSF1-202ENST00000527827 B3GALT4O96024 378 aa22.1■■□□□ 1.13
CPSF1-202ENST00000527827 ZNF24P17028 368 aa22.1■■□□□ 1.13
CPSF1-202ENST00000527827 CCND1P24385 295 aa22.1■■□□□ 1.13
CPSF1-202ENST00000527827 OLR1P78380 273 aa22.1■■□□□ 1.13
CPSF1-202ENST00000527827 MEF2AQ02078 507 aaPredicted RBP22.1■■□□□ 1.13
CPSF1-202ENST00000527827 PHKG1Q16816 387 aa22.1■■□□□ 1.13
CPSF1-202ENST00000527827 LRRC8EQ6NSJ5 796 aa22.1■■□□□ 1.13
CPSF1-202ENST00000527827 ABHD11Q8NFV4 315 aa22.1■■□□□ 1.13
CPSF1-202ENST00000527827 OR4K1Q8NGD4 311 aa22.1■■□□□ 1.13
CPSF1-202ENST00000527827 CALML6Q8TD86 181 aa22.1■■□□□ 1.13
CPSF1-202ENST00000527827 NDNQ99608 321 aa22.1■■□□□ 1.13
CPSF1-202ENST00000527827 VKORC1Q9BQB6 163 aa22.1■■□□□ 1.13
CPSF1-202ENST00000527827 TRIM45Q9H8W5 580 aaPredicted RBP22.1■■□□□ 1.13
CPSF1-202ENST00000527827 SLC16A5O15375 505 aa22.09■■□□□ 1.13
CPSF1-202ENST00000527827 CAPN3P20807 821 aa22.09■■□□□ 1.13
CPSF1-202ENST00000527827 MLF1P58340 268 aa22.09■■□□□ 1.13
CPSF1-202ENST00000527827 SP140Q13342 867 aa22.09■■□□□ 1.13
CPSF1-202ENST00000527827 DEFB134Q4QY38 66 aa22.09■■□□□ 1.13
CPSF1-202ENST00000527827 HSP90AA5PQ58FG0 334 aa22.09■■□□□ 1.13
CPSF1-202ENST00000527827 SIGLEC10Q96LC7 697 aa22.09■■□□□ 1.13
CPSF1-202ENST00000527827 LZTFL1Q9NQ48 299 aa22.09■■□□□ 1.13
CPSF1-202ENST00000527827 IARS2Q9NSE4 1012 aaKnown RBP22.09■■□□□ 1.13
CPSF1-202ENST00000527827 MAD1L1Q9Y6D9 718 aa22.09■■□□□ 1.13
CPSF1-202ENST00000527827 NDUFS4O43181 175 aa22.08■■□□□ 1.13
CPSF1-202ENST00000527827 B4GALT2O60909 372 aa22.08■■□□□ 1.13
CPSF1-202ENST00000527827 TSPAN12O95859 305 aa22.08■■□□□ 1.13
CPSF1-202ENST00000527827 ALOX12P18054 663 aa22.08■■□□□ 1.13
CPSF1-202ENST00000527827 RGS4P49798 205 aa22.08■■□□□ 1.13
CPSF1-202ENST00000527827 CCR8P51685 355 aa22.08■■□□□ 1.13
CPSF1-202ENST00000527827 BTG2P78543 158 aa22.08■■□□□ 1.13
CPSF1-202ENST00000527827 DHX9Q08211 1270 aaKnown RBP22.08■■□□□ 1.13
CPSF1-202ENST00000527827 PWP1Q13610 501 aa22.08■■□□□ 1.13
CPSF1-202ENST00000527827 UGT3A1Q6NUS8 523 aa22.08■■□□□ 1.13
CPSF1-202ENST00000527827 PAQR3Q6TCH7 311 aa22.08■■□□□ 1.13
CPSF1-202ENST00000527827 PYCR2Q96C36 320 aa22.08■■□□□ 1.13
CPSF1-202ENST00000527827 PTCHD1Q96NR3 888 aa22.08■■□□□ 1.13
CPSF1-202ENST00000527827 TREX2Q9BQ50 279 aaPredicted RBP22.08■■□□□ 1.13
CPSF1-202ENST00000527827 HAUS8Q9BT25 410 aa22.08■■□□□ 1.13
CPSF1-202ENST00000527827 FAM167BQ9BTA0 163 aa22.08■■□□□ 1.13
CPSF1-202ENST00000527827 PRRG2O14669 202 aa22.07■■□□□ 1.12
CPSF1-202ENST00000527827 OR1F1O43749 312 aa22.07■■□□□ 1.12
CPSF1-202ENST00000527827 JAK1P23458 1154 aa22.07■■□□□ 1.12
CPSF1-202ENST00000527827 PTGER1P34995 402 aa22.07■■□□□ 1.12
CPSF1-202ENST00000527827 CYB561P49447 251 aa22.07■■□□□ 1.12
CPSF1-202ENST00000527827 TLE4Q04727 773 aa22.07■■□□□ 1.12
CPSF1-202ENST00000527827 ZNF662Q6ZS27 426 aa22.07■■□□□ 1.12
CPSF1-202ENST00000527827 PALM2Q8IXS6 379 aa22.07■■□□□ 1.12
CPSF1-202ENST00000527827 CYP4X1Q8N118 509 aa22.07■■□□□ 1.12
CPSF1-202ENST00000527827 MYO1HQ8N1T3 1032 aa22.07■■□□□ 1.12
CPSF1-202ENST00000527827 NFAM1Q8NET5 270 aaPredicted RBP22.07■■□□□ 1.12
CPSF1-202ENST00000527827 OR56A3Q8NH54 315 aa22.07■■□□□ 1.12
CPSF1-202ENST00000527827 SDCCAG3Q96C92 435 aa22.07■■□□□ 1.12
CPSF1-202ENST00000527827 OR4K3Q96R72 315 aa22.07■■□□□ 1.12
CPSF1-202ENST00000527827 SPNS1Q9H2V7 528 aa22.07■■□□□ 1.12
CPSF1-202ENST00000527827 PPT2Q9UMR5 302 aa22.07■■□□□ 1.12
CPSF1-202ENST00000527827 NEU2Q9Y3R4 380 aa22.07■■□□□ 1.12
CPSF1-202ENST00000527827 TRBC2A0A5B9 178 aa22.06■■□□□ 1.12
CPSF1-202ENST00000527827 ZNF888P0CJ79 500 aaPredicted RBP22.06■■□□□ 1.12
CPSF1-202ENST00000527827 GABRB3P28472 473 aa22.06■■□□□ 1.12
CPSF1-202ENST00000527827 TRHRP34981 398 aaPredicted RBP22.06■■□□□ 1.12
CPSF1-202ENST00000527827 HLCSP50747 726 aa22.06■■□□□ 1.12
CPSF1-202ENST00000527827 ITGA8P53708 1063 aa22.06■■□□□ 1.12
CPSF1-202ENST00000527827 CDKN2DP55273 166 aa22.06■■□□□ 1.12
CPSF1-202ENST00000527827 DUPD1Q68J44 220 aa22.06■■□□□ 1.12
CPSF1-202ENST00000527827 MEX3BQ6ZN04 569 aaKnown RBP22.06■■□□□ 1.12
CPSF1-202ENST00000527827 QSOX2Q6ZRP7 698 aa22.06■■□□□ 1.12
CPSF1-202ENST00000527827 CDH24Q86UP0 819 aa22.06■■□□□ 1.12
CPSF1-202ENST00000527827 ARMC10Q8N2F6 343 aa22.06■■□□□ 1.12
CPSF1-202ENST00000527827 SERBP1Q8NC51 408 aaKnown RBP eCLIP22.06■■□□□ 1.12
CPSF1-202ENST00000527827 C2CD4AQ8NCU7 369 aaPredicted RBP22.06■■□□□ 1.12
CPSF1-202ENST00000527827 NT5CQ8TCD5 201 aa22.06■■□□□ 1.12
CPSF1-202ENST00000527827 CA5BP1Q8WTZ4 195 aa22.06■■□□□ 1.12
CPSF1-202ENST00000527827 CHTF18Q8WVB6 975 aa22.06■■□□□ 1.12
CPSF1-202ENST00000527827 LINGO1Q96FE5 620 aa22.06■■□□□ 1.12
CPSF1-202ENST00000527827 SNF8Q96H20 258 aa22.06■■□□□ 1.12
CPSF1-202ENST00000527827 MCCC2Q9HCC0 563 aa22.06■■□□□ 1.12
CPSF1-202ENST00000527827 TAS2R13Q9NYV9 303 aa22.06■■□□□ 1.12
CPSF1-202ENST00000527827 SAGE2PA6NJ88 616 aa22.05■■□□□ 1.12
CPSF1-202ENST00000527827 PRMT3O60678 531 aa22.05■■□□□ 1.12
CPSF1-202ENST00000527827 SERPIND1P05546 499 aa22.05■■□□□ 1.12
CPSF1-202ENST00000527827 MAOAP21397 527 aa22.05■■□□□ 1.12
CPSF1-202ENST00000527827 CATSPEREQ5SY80 951 aa22.05■■□□□ 1.12
CPSF1-202ENST00000527827 RBM20Q5T481 1227 aaKnown RBP22.05■■□□□ 1.12
CPSF1-202ENST00000527827 SPNS3Q6ZMD2 512 aa22.05■■□□□ 1.12
CPSF1-202ENST00000527827 STRA8Q7Z7C7 330 aa22.05■■□□□ 1.12
CPSF1-202ENST00000527827 EID3Q8N140 333 aa22.05■■□□□ 1.12
CPSF1-202ENST00000527827 NAT8LQ8N9F0 302 aa22.05■■□□□ 1.12
CPSF1-202ENST00000527827 MAGOHBQ96A72 148 aaKnown RBP22.05■■□□□ 1.12
CPSF1-202ENST00000527827 HRH3Q9Y5N1 445 aa22.05■■□□□ 1.12
CPSF1-202ENST00000527827 HCFC1P51610 2035 aa22.05■■□□□ 1.12
CPSF1-202ENST00000527827 MTORP42345 2549 aa22.05■■□□□ 1.12
CPSF1-202ENST00000527827 IGKV3D-11A0A0A0MRZ8 115 aa22.04■■□□□ 1.12
CPSF1-202ENST00000527827 TCRBV16S1A1N1A0A5B0 115 aa22.04■■□□□ 1.12
CPSF1-202ENST00000527827 CTAGE15A4D2H0 777 aa22.04■■□□□ 1.12
CPSF1-202ENST00000527827 HIST1H2AGP0C0S8 130 aaPredicted RBP22.04■■□□□ 1.12
CPSF1-202ENST00000527827 HIST1H2ADP20671 130 aa22.04■■□□□ 1.12
CPSF1-202ENST00000527827 SCTRP47872 440 aa22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms