RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 CHTOPQ9Y3Y2 248 aaKnown RBP5.62□□□□□ -1.51
CD44-225ENST00000527326 CMAHPQ9Y471 501 aa5.62□□□□□ -1.51
CD44-225ENST00000527326 PCDHB7Q9Y5E2 793 aa5.62□□□□□ -1.51
CD44-225ENST00000527326 BACE2Q9Y5Z0 518 aa5.62□□□□□ -1.51
CD44-225ENST00000527326 PRR36Q9H6K5 1346 aa5.62□□□□□ -1.51
CD44-225ENST00000527326 TRBV23-1A0A0A0MS06 115 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 A0A0U1RQS6 177 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 IQCMA0A1B0GVH7 501 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 C9orf170A2RU37 121 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 SLC15A5A6NIM6 579 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 KIAA1324LA8MWY0 1029 aaPredicted RBP5.61□□□□□ -1.51
CD44-225ENST00000527326 SMLR1H3BR10 107 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 APOC4-APOC2K7ER74 178 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 UPK1AO00322 258 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 IFRD1O00458 451 aaPredicted RBP5.61□□□□□ -1.51
CD44-225ENST00000527326 SOX1O00570 391 aaPredicted RBP5.61□□□□□ -1.51
CD44-225ENST00000527326 PPP6CO00743 305 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 UBE2CO00762 179 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 CLDN4O14493 209 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 TBX3O15119 743 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 TCAPO15273 167 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 KCNQ2O43526 872 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 SLC37A4O43826 429 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 PRKRAO75569 313 aaKnown RBP5.61□□□□□ -1.51
CD44-225ENST00000527326 RAD17O75943 681 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 GLUD1P00367 558 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 MBP02144 154 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 APOC2P02655 101 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 HOXC4P09017 264 aaPredicted RBP5.61□□□□□ -1.51
CD44-225ENST00000527326 SBK2P0C263 348 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 ERVK-10P10266 1014 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 EDN3P14138 238 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 FOLR2P14207 255 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 VEGFAP15692 232 aaPredicted RBP5.61□□□□□ -1.51
CD44-225ENST00000527326 TSPAN8P19075 237 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 LHCGRP22888 699 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 XPAP23025 273 aaPredicted RBP5.61□□□□□ -1.51
CD44-225ENST00000527326 FPR3P25089 353 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 STOMP27105 288 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 HTR1EP28566 365 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 YWHABP31946 246 aaKnown RBP5.61□□□□□ -1.51
CD44-225ENST00000527326 TGFBR1P36897 503 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 ZNF81P51508 661 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 CDH6P55285 790 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 MAZP56270 477 aaKnown RBP5.61□□□□□ -1.51
CD44-225ENST00000527326 KIAA1024LP59773 190 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 ROR1Q01973 937 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 CHRNB3Q05901 458 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 SPP2Q13103 211 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 TP53BP2Q13625 1128 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 PIGHQ14442 188 aaPredicted RBP5.61□□□□□ -1.51
CD44-225ENST00000527326 SF3A2Q15428 464 aaKnown RBP5.61□□□□□ -1.51
CD44-225ENST00000527326 GLYR1Q49A26 553 aaPredicted RBP5.61□□□□□ -1.51
CD44-225ENST00000527326 XKR9Q5GH70 373 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 NHLRC3Q5JS37 347 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 CD276Q5ZPR3 534 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 TRIQKQ629K1 86 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 TMEM198Q66K66 360 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 VASNQ6EMK4 673 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 CAPN13Q6MZZ7 669 aaPredicted RBP5.61□□□□□ -1.51
CD44-225ENST00000527326 RPL13AP3Q6NVV1 102 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 DARS2Q6PI48 645 aaKnown RBP5.61□□□□□ -1.51
CD44-225ENST00000527326 HAGHLQ6PII5 290 aaPredicted RBP5.61□□□□□ -1.51
CD44-225ENST00000527326 FAM111BQ6SJ93 734 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 LAYNQ6UX15 382 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 SEZ6L2Q6UXD5 910 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 ZPBP2Q6X784 338 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 GDPGP1Q6ZNW5 385 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 REC114Q7Z4M0 266 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 RBM23Q86U06 439 aaKnown RBP5.61□□□□□ -1.51
CD44-225ENST00000527326 PHF13Q86YI8 300 aaPredicted RBP5.61□□□□□ -1.51
CD44-225ENST00000527326 FAM217AQ8IXS0 508 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 SLX4Q8IY92 1834 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 CERS5Q8N5B7 392 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 UXS1Q8NBZ7 420 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 ZNF540Q8NDQ6 660 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 C19orf18Q8NEA5 215 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 OR5K1Q8NHB7 308 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 FEZF2Q8TBJ5 459 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 CREB3L4Q8TEY5 395 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 TSPEARQ8WU66 669 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 NR4A3Q92570 626 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 USP7Q93009 1102 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 MFSD3Q96ES6 412 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 LRRC46Q96FV0 321 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 EAF1Q96JC9 268 aaPredicted RBP5.61□□□□□ -1.51
CD44-225ENST00000527326 C7orf34Q96L11 122 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 COQ10AQ96MF6 247 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 NECTIN4Q96NY8 510 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 SIGLEC11Q96RL6 698 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 MCCC1Q96RQ3 725 aaPredicted RBP5.61□□□□□ -1.51
CD44-225ENST00000527326 CYP2S1Q96SQ9 504 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 NELL2Q99435 816 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 SLC38A3Q99624 504 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 CGRRF1Q99675 332 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 VRK1Q99986 396 aaPredicted RBP5.61□□□□□ -1.51
CD44-225ENST00000527326 REEP2Q9BRK0 252 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 TMEM175Q9BSA9 504 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 NTMT1Q9BV86 223 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 PLA2G12BQ9BX93 195 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms