RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	TXNRD3NB	Q6F5E7	133 aa		3.89	□□□□□ -1.79
CD44-223	ENST00000526553	CASC4	Q6P4E1	433 aa		3.89	□□□□□ -1.79
CD44-223	ENST00000526553	CTR9	Q6PD62	1173 aa		3.89	□□□□□ -1.79
CD44-223	ENST00000526553	RCOR2	Q8IZ40	523 aa		3.89	□□□□□ -1.79
CD44-223	ENST00000526553		Q8NBF4	154 aa		3.89	□□□□□ -1.79
CD44-223	ENST00000526553	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	3.89	□□□□□ -1.79
CD44-223	ENST00000526553	TSACC	Q96A04	125 aa	Predicted RBP	3.89	□□□□□ -1.79
CD44-223	ENST00000526553	OVOL2	Q9BRP0	275 aa		3.89	□□□□□ -1.79
CD44-223	ENST00000526553	ZNF350	Q9GZX5	532 aa		3.89	□□□□□ -1.79
CD44-223	ENST00000526553	SDCBP2	Q9H190	292 aa		3.89	□□□□□ -1.79
CD44-223	ENST00000526553	MTHFD2L	Q9H903	347 aa	Predicted RBP	3.89	□□□□□ -1.79
CD44-223	ENST00000526553	LMAN1L	Q9HAT1	526 aa		3.89	□□□□□ -1.79
CD44-223	ENST00000526553	SEPT10	Q9P0V9	454 aa		3.89	□□□□□ -1.79
CD44-223	ENST00000526553	MYO15B	Q96JP2	1530 aa		3.89	□□□□□ -1.79
CD44-223	ENST00000526553	CCL24	O00175	119 aa		3.88	□□□□□ -1.79
CD44-223	ENST00000526553	KERA	O60938	352 aa		3.88	□□□□□ -1.79
CD44-223	ENST00000526553	MT-ND3	P03897	115 aa		3.88	□□□□□ -1.79
CD44-223	ENST00000526553	PTMA	P06454	111 aa	Known RBP	3.88	□□□□□ -1.79
CD44-223	ENST00000526553	RBMS1	P29558	406 aa	Known RBP	3.88	□□□□□ -1.79
CD44-223	ENST00000526553	CETN2	P41208	172 aa		3.88	□□□□□ -1.79
CD44-223	ENST00000526553	FRK	P42685	505 aa	Predicted RBP	3.88	□□□□□ -1.79
CD44-223	ENST00000526553	RGS7	P49802	495 aa		3.88	□□□□□ -1.79
CD44-223	ENST00000526553	MFAP3	P55082	362 aa		3.88	□□□□□ -1.79
CD44-223	ENST00000526553	ACTN3	Q08043	901 aa	Predicted RBP	3.88	□□□□□ -1.79
CD44-223	ENST00000526553	AP1B1	Q10567	949 aa		3.88	□□□□□ -1.79
CD44-223	ENST00000526553	NONO	Q15233	471 aa	Known RBP eCLIP	3.88	□□□□□ -1.79
CD44-223	ENST00000526553	PTGIS	Q16647	500 aa		3.88	□□□□□ -1.79
CD44-223	ENST00000526553	LCE3C	Q5T5A8	94 aa		3.88	□□□□□ -1.79
CD44-223	ENST00000526553	CES4A	Q5XG92	561 aa		3.88	□□□□□ -1.79
CD44-223	ENST00000526553	ALKBH5	Q6P6C2	394 aa	Known RBP	3.88	□□□□□ -1.79
CD44-223	ENST00000526553	TMEM182	Q6ZP80	229 aa	Predicted RBP	3.88	□□□□□ -1.79
CD44-223	ENST00000526553	CREBRF	Q8IUR6	639 aa		3.88	□□□□□ -1.79
CD44-223	ENST00000526553	SIAH3	Q8IW03	269 aa		3.88	□□□□□ -1.79
CD44-223	ENST00000526553	GPC2	Q8N158	579 aa		3.88	□□□□□ -1.79
CD44-223	ENST00000526553	SEPT1	Q8WYJ6	367 aa		3.88	□□□□□ -1.79
CD44-223	ENST00000526553	KRT35	Q92764	455 aa		3.88	□□□□□ -1.79
CD44-223	ENST00000526553	PDLIM5	Q96HC4	596 aa	Known RBP	3.88	□□□□□ -1.79
CD44-223	ENST00000526553	C2orf48	Q96LS8	159 aa		3.88	□□□□□ -1.79
CD44-223	ENST00000526553	FAM218A	Q96MZ4	157 aa		3.88	□□□□□ -1.79
CD44-223	ENST00000526553	SPATA33	Q96N06	139 aa		3.88	□□□□□ -1.79
CD44-223	ENST00000526553	AGAP4	Q96P64	663 aa		3.88	□□□□□ -1.79
CD44-223	ENST00000526553	KLHL5	Q96PQ7	755 aa		3.88	□□□□□ -1.79
CD44-223	ENST00000526553	ATP6V0B	Q99437	205 aa		3.88	□□□□□ -1.79
CD44-223	ENST00000526553	ACAT2	Q9BWD1	397 aa		3.88	□□□□□ -1.79
CD44-223	ENST00000526553	CWC25	Q9NXE8	425 aa	Predicted RBP	3.88	□□□□□ -1.79
CD44-223	ENST00000526553	MOSPD1	Q9UJG1	213 aa		3.88	□□□□□ -1.79
CD44-223	ENST00000526553	TP53BP1	Q12888	1972 aa	Predicted RBP	3.88	□□□□□ -1.79
CD44-223	ENST00000526553	IL16	Q14005	1332 aa		3.88	□□□□□ -1.79
CD44-223	ENST00000526553	ERCC6	Q03468	1493 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	TRBV4-1	A0A0J9YWV2	114 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	GTPBP10	A4D1E9	387 aa	Known RBP	3.87	□□□□□ -1.79
CD44-223	ENST00000526553	KIN	O60870	393 aa	Known RBP	3.87	□□□□□ -1.79
CD44-223	ENST00000526553	FCGR3B	O75015	233 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	TCF4	P15884	667 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	ITIH1	P19827	911 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	DCDC1	P59894	354 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	RPA4	Q13156	261 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	TRA2A	Q13595	282 aa	Known RBP eCLIP	3.87	□□□□□ -1.79
CD44-223	ENST00000526553	TAZ	Q16635	292 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	LACTB2	Q53H82	288 aa	Predicted RBP	3.87	□□□□□ -1.79
CD44-223	ENST00000526553	CCDC158	Q5M9N0	1113 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	DDX59	Q5T1V6	619 aa	Known RBP eCLIP	3.87	□□□□□ -1.79
CD44-223	ENST00000526553	TATDN1	Q6P1N9	297 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	SLC24A5	Q71RS6	500 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	NRARP	Q7Z6K4	114 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	ZER1	Q7Z7L7	766 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	FAM219A	Q8IW50	185 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	AQP11	Q8NBQ7	271 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	SNRNP40	Q96DI7	357 aa	Known RBP	3.87	□□□□□ -1.79
CD44-223	ENST00000526553	BSCL2	Q96G97	398 aa	Predicted RBP	3.87	□□□□□ -1.79
CD44-223	ENST00000526553	BTBD9	Q96Q07	612 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	HNRNPAB	Q99729	332 aa	Known RBP	3.87	□□□□□ -1.79
CD44-223	ENST00000526553	DCTN5	Q9BTE1	182 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	PI4K2A	Q9BTU6	479 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	SLC5A7	Q9GZV3	580 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	MINDY3	Q9H8M7	445 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	PANK3	Q9H999	370 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	B3GAT2	Q9NPZ5	323 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	TMEM161A	Q9NX61	479 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	SLCO1C1	Q9NYB5	712 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	CNIH4	Q9P003	139 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	MUTYH	Q9UIF7	546 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	FBXL5	Q9UKA1	691 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553	PA2G4	Q9UQ80	394 aa	Known RBP	3.87	□□□□□ -1.79
CD44-223	ENST00000526553	CSAG2	Q9Y5P2	127 aa		3.87	□□□□□ -1.79
CD44-223	ENST00000526553		A0A1W2PPW3	197 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553		A0A1W2PRV1	198 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	PGRMC2	O15173	223 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	ZBTB14	O43829	449 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	SELENOF	O60613	162 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	RAD51D	O75771	328 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	C8orf89	P0DMQ9	161 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	MYOG	P15173	224 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	GMPS	P49915	693 aa	Predicted RBP	3.86	□□□□□ -1.79
CD44-223	ENST00000526553	MTCP1	P56278	107 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	KIAA1024L	P59773	190 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	PTEN	P60484	403 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	MS4A2	Q01362	244 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	CACNG1	Q06432	222 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	SMC1A	Q14683	1233 aa	Known RBP	3.86	□□□□□ -1.79

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