RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 TDHQ8IZJ6 230 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 CCDC185Q8N715 623 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 TMEM99Q8N816 258 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 SMYD1Q8NB12 490 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 LPCAT1Q8NF37 534 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 OR5T2Q8NGG2 359 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 OR4D10Q8NGI6 311 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 PSMA8Q8TAA3 256 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 KRT35Q92764 455 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 RFT1Q96AA3 541 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 OMA1Q96E52 524 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 C2orf48Q96LS8 159 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 SLC39A8Q9C0K1 460 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 MID1IP1Q9NPA3 183 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 PLCXD1Q9NUJ7 323 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 FBXW2Q9UKT8 454 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 SNX5Q9Y5X3 404 aa3.53□□□□□ -1.84
HMGB1P28-201ENST00000507778 A0A087WZ39 114 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 A0A087X002 238 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 C2orf92A0A1B0GVN3 265 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 NKX6-3A6NJ46 265 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 H0YIG0 161 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 CACNB4O00305 520 aaPredicted RBP3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 EDIL3O43854 480 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 AKAP3O75969 853 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 NXPH2O95156 264 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 LETM1O95202 739 aaPredicted RBP3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 SBK2P0C263 348 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 SRD5A2P31213 254 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 TSFMP43897 325 aaKnown RBP3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 CRIP2P52943 208 aaPredicted RBP3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 ADARP55265 1226 aaKnown RBP3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 SLC3A1Q07837 685 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 PPP2R5CQ13362 524 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 GRB14Q14449 540 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 TMEM187Q14656 261 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 ZFP69Q49AA0 526 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 LRRC37A5PQ49AS3 106 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 WLSQ5T9L3 541 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 ATP1A1-AS1Q5TC04 95 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 PRAMEF8Q5VWM4 474 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 KCTD11Q693B1 232 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 SLC27A4Q6P1M0 643 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 SIGLEC15Q6ZMC9 328 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 CHMP1BQ7LBR1 199 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 TRMT11Q7Z4G4 463 aaKnown RBP3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 ASPGQ86U10 573 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 ZC3H3Q8IXZ2 948 aaKnown RBP3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 TEX26Q8N6G2 289 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 ZNF248Q8NDW4 579 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 SAP25Q8TEE9 199 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 BCL2L2Q92843 193 aaPredicted RBP3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 CASP10Q92851 521 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 PDLIM5Q96HC4 596 aaKnown RBP3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 CABS1Q96KC9 395 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 SYT15Q9BQS2 421 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 OSBPL8Q9BZF1 889 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 NAPBQ9H115 298 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 SCRT2Q9NQ03 307 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 TXLNGQ9NUQ3 528 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 SATB2Q9UPW6 733 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 ZNF510Q9Y2H8 683 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 TMED7Q9Y3B3 224 aa3.52□□□□□ -1.85
HMGB1P28-201ENST00000507778 SPATA31D1Q6ZQQ2 1576 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 ZNF732B4DXR9 585 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 RTCAO00442 366 aaKnown RBP3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 MLNRO43193 412 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 SOCS5O75159 536 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 CLN5O75503 358 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 PNPP00491 289 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 IGHEP01854 428 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 HLA-DPA1P20036 260 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 CTNNA2P26232 953 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 SLC1A3P43003 542 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 SLC6A12P48065 614 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 CLCN4P51793 760 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 ACTN3Q08043 901 aaPredicted RBP3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 RPA4Q13156 261 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 RPS6KA1Q15418 735 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 MAPK11Q15759 364 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 FAM106AQ4KMX7 169 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 TCEAL6Q6IPX3 200 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 Q6ZTC4 211 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 RNF149Q8NC42 400 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 ADAD2Q8NCV1 583 aaKnown RBP3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 OR2T6Q8NHC8 308 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 ST7LQ8TDW4 575 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 CHURC1Q8WUH1 139 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 SEPT8Q92599 483 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 SNX21Q969T3 373 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 CFAP36Q96G28 342 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 KRT12Q99456 494 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 ASCL2Q99929 193 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 DGCR6LQ9BY27 220 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 ACPTQ9BZG2 426 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 HOXD1Q9GZZ0 328 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 COMMD8Q9NX08 183 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 KLHL8Q9P2G9 620 aaPredicted RBP3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 CACNG5Q9UF02 275 aa3.51□□□□□ -1.85
HMGB1P28-201ENST00000507778 RNF123Q5XPI4 1314 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms