RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 SLC25A46Q96AG3 418 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 C12orf10Q9HB07 376 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 MAPRE3Q9UPY8 281 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 PCDHGC4Q9Y5F7 938 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 FADS2P1A8MWK0 482 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 MEN1O00255 615 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 GCM2O75603 506 aaPredicted RBP16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 LGI1O95970 557 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 IGHA2P01877 340 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 FHP07954 510 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 DGKAP23743 735 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 UQCRC1P31930 480 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 SELENOWP63302 87 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 SRSF11Q05519 484 aaKnown RBP16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 DSC3Q14574 896 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 PTGES3Q15185 160 aaKnown RBP16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 PDZK1Q5T2W1 519 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 SDHAF4Q5VUM1 108 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 SLC51BQ86UW2 128 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 ZNF557Q8N988 423 aaPredicted RBP16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 OR52J3Q8NH60 311 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 ENKURQ8TC29 256 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 SPPL2AQ8TCT8 520 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 CREB3L4Q8TEY5 395 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 ABCG8Q9H221 673 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 ABHD16BQ9H3Z7 469 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 TPT1P8Q9HAU6 139 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 OGDHLQ9ULD0 1010 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 STUB1Q9UNE7 303 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 PCDHB11Q9Y5F2 797 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 RAI2Q9Y5P3 530 aa16.46■□□□□ 0.23
SQSTM1-211ENST00000506690 HYKKA2RU49 373 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 FABP12A6NFH5 140 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 MPZL2O60487 215 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 ACADMP11310 421 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 AQP1P29972 269 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 GPC1P35052 558 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 BOP1Q14137 746 aaKnown RBP16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 EXOC3L2Q2M3D2 409 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 MBOAT1Q6ZNC8 495 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 MIB1Q86YT6 1006 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 GRAMD2AQ8IUY3 354 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 CLECL1Q8IZS7 167 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 OR7D4Q8NG98 312 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 APOLD1Q96LR9 279 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 NECTIN4Q96NY8 510 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 RDH14Q9HBH5 336 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 TMEM39AQ9NV64 488 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 B3GNT2Q9NY97 397 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 SH3BP4Q9P0V3 963 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 FZD4Q9ULV1 537 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 KCNE1BA0A087WTH5 132 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 TEX51A0A1B0GUA7 166 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 NBNO60934 754 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 TMCC2O75069 709 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 AMD1P17707 334 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 RPS3P23396 243 aaKnown RBP eCLIP16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 TUFMP49411 452 aaKnown RBP16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 CDH12P55289 794 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 SNRPD2P62316 118 aaKnown RBP16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 NOXRED1Q6NXP6 359 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 SLC44A2Q8IWA5 706 aaPredicted RBP16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 FAM217AQ8IXS0 508 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 OR9Q2Q8NGE9 314 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 OR8J2Q8NGG1 315 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 GTF3C2Q8WUA4 911 aaPredicted RBP16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 KIAA1143Q96AT1 154 aaPredicted RBP16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 MS4A4AQ96JQ5 239 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 ELOVL6Q9H5J4 265 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 CLN6Q9NWW5 311 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 FAM120CQ9NX05 1096 aaKnown RBP16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 NDUFB11Q9NX14 153 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 MAT2BQ9NZL9 334 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 ALG5Q9Y673 324 aa16.45■□□□□ 0.22
SQSTM1-211ENST00000506690 CSO75390 466 aaKnown RBP16.44■□□□□ 0.22
SQSTM1-211ENST00000506690 PDE9AO76083 593 aa16.44■□□□□ 0.22
SQSTM1-211ENST00000506690 CPSF4O95639 269 aaKnown RBP16.44■□□□□ 0.22
SQSTM1-211ENST00000506690 IGLV3-27P01718 113 aa16.44■□□□□ 0.22
SQSTM1-211ENST00000506690 F11P03951 625 aa16.44■□□□□ 0.22
SQSTM1-211ENST00000506690 OR4Q2P0C623 313 aa16.44■□□□□ 0.22
SQSTM1-211ENST00000506690 HLA-EP13747 358 aa16.44■□□□□ 0.22
SQSTM1-211ENST00000506690 PCGF2P35227 344 aa16.44■□□□□ 0.22
SQSTM1-211ENST00000506690 SPIBQ01892 262 aa16.44■□□□□ 0.22
SQSTM1-211ENST00000506690 GGTA1PQ4G0N0 100 aa16.44■□□□□ 0.22
SQSTM1-211ENST00000506690 PLET1Q6UQ28 207 aa16.44■□□□□ 0.22
SQSTM1-211ENST00000506690 CERS6Q6ZMG9 384 aa16.44■□□□□ 0.22
SQSTM1-211ENST00000506690 AMIGO1Q86WK6 493 aa16.44■□□□□ 0.22
SQSTM1-211ENST00000506690 TRIM69Q86WT6 500 aa16.44■□□□□ 0.22
SQSTM1-211ENST00000506690 BBS7Q8IWZ6 715 aa16.44■□□□□ 0.22
SQSTM1-211ENST00000506690 CAMKK1Q8N5S9 505 aa16.44■□□□□ 0.22
SQSTM1-211ENST00000506690 KLHDC9Q8NEP7 349 aa16.44■□□□□ 0.22
SQSTM1-211ENST00000506690 MAL2Q969L2 176 aa16.44■□□□□ 0.22
SQSTM1-211ENST00000506690 NACC2Q96BF6 587 aa16.44■□□□□ 0.22
SQSTM1-211ENST00000506690 ZC3HAV1LQ96H79 300 aaKnown RBP16.44■□□□□ 0.22
SQSTM1-211ENST00000506690 ADGRE3Q9BY15 652 aa16.44■□□□□ 0.22
SQSTM1-211ENST00000506690 RACGAP1Q9H0H5 632 aa16.44■□□□□ 0.22
SQSTM1-211ENST00000506690 MAGEH1Q9H213 219 aa16.44■□□□□ 0.22
SQSTM1-211ENST00000506690 SLC25A19Q9HC21 320 aa16.44■□□□□ 0.22
SQSTM1-211ENST00000506690 IL17CQ9P0M4 197 aa16.44■□□□□ 0.22
SQSTM1-211ENST00000506690 TEKT2Q9UIF3 430 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms