RNA–Protein interactions for RNA: ENST00000496030.1

APTX-233, Transcript of aprataxin, human

TSL 3

Gene APTX, Length 633 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-233	ENST00000496030	RBBP5	Q15291	538 aa	Known RBP	11.31	□□□□□ -0.6
APTX-233	ENST00000496030	IGFBP7	Q16270	282 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	FAM214A	Q32MH5	1076 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	MANEA	Q5SRI9	462 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	AGBL2	Q5U5Z8	902 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	LIPJ	Q5W064	366 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	GRHL2	Q6ISB3	625 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	TMEM214	Q6NUQ4	689 aa	Known RBP	11.31	□□□□□ -0.6
APTX-233	ENST00000496030	TTLL10	Q6ZVT0	673 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	11.31	□□□□□ -0.6
APTX-233	ENST00000496030	CACNA2D3	Q8IZS8	1091 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	NLGN4X	Q8N0W4	816 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	SHISA5	Q8N114	240 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	KRT78	Q8N1N4	520 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	AFAP1L2	Q8N4X5	818 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	ESX1	Q8N693	406 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	NLGN4Y	Q8NFZ3	816 aa	Predicted RBP	11.31	□□□□□ -0.6
APTX-233	ENST00000496030	OR7G3	Q8NG95	312 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	TRPC4AP	Q8TEL6	797 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	ZDHHC19	Q8WVZ1	309 aa	Predicted RBP	11.31	□□□□□ -0.6
APTX-233	ENST00000496030	RERG	Q96A58	199 aa	Predicted RBP	11.31	□□□□□ -0.6
APTX-233	ENST00000496030	CCDC126	Q96EE4	140 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	SMIM10	Q96HG1	83 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	CDK15	Q96Q40	435 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	NDC1	Q9BTX1	674 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	MECR	Q9BV79	373 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	GATA5	Q9BWX5	397 aa	Predicted RBP	11.31	□□□□□ -0.6
APTX-233	ENST00000496030	SLC6A16	Q9GZN6	736 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	KLHL31	Q9H511	634 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	LHX9	Q9NQ69	397 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	PADI1	Q9ULC6	663 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	SRPK3	Q9UPE1	567 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	TSC22D4	Q9Y3Q8	395 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	ANGPTL3	Q9Y5C1	460 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	CACNA1D	Q01668	2161 aa		11.31	□□□□□ -0.6
APTX-233	ENST00000496030	C4orf51	C9J302	202 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030		H0YIV9	168 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	TXNDC9	O14530	226 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	UGDH	O60701	494 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	CNOT3	O75175	753 aa	Known RBP	11.3	□□□□□ -0.6
APTX-233	ENST00000496030	KATNA1	O75449	491 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	CLDN9	O95484	217 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	ITGB2	P05107	769 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	BPGM	P07738	259 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	SERPINA6	P08185	405 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	WT1	P19544	449 aa	Predicted RBP	11.3	□□□□□ -0.6
APTX-233	ENST00000496030	HNF4A	P41235	474 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	ARSF	P54793	590 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	MAGOH	P61326	146 aa	Known RBP	11.3	□□□□□ -0.6
APTX-233	ENST00000496030	CYP4F2	P78329	520 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	ABHD18	Q0P651	414 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	FAM53B	Q14153	422 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	ADPRM	Q3LIE5	342 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	TTMP	Q5BVD1	217 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	C1orf189	Q5VU69	101 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	GARNL3	Q5VVW2	1013 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	CES4A	Q5XG92	561 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	LETMD1	Q6P1Q0	360 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	PRSS41	Q7RTY9	318 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	SYVN1	Q86TM6	617 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	PDSS2	Q86YH6	399 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	TMEM151B	Q8IW70	566 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	CAMKV	Q8NCB2	501 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	OR4F6	Q8NGB9	312 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	WDR20	Q8TBZ3	569 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	PROKR1	Q8TCW9	393 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	ZNF473	Q8WTR7	871 aa	Known RBP	11.3	□□□□□ -0.6
APTX-233	ENST00000496030	CT55	Q8WUE5	264 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	CLIP3	Q96DZ5	547 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	SEC16B	Q96JE7	1060 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	RUFY1	Q96T51	708 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	IQCG	Q9H095	443 aa	Known RBP	11.3	□□□□□ -0.6
APTX-233	ENST00000496030	EPN3	Q9H201	632 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	CHST8	Q9H2A9	424 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	ACTR8	Q9H981	624 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	TNFRSF12A	Q9NP84	129 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030	SLC22A7	Q9Y694	548 aa		11.3	□□□□□ -0.6
APTX-233	ENST00000496030		A0A1B0GX78	115 aa		11.29	□□□□□ -0.6
APTX-233	ENST00000496030	BLACE	A4D250	179 aa		11.29	□□□□□ -0.6
APTX-233	ENST00000496030	LRIT2	A6NDA9	550 aa		11.29	□□□□□ -0.6
APTX-233	ENST00000496030	NDUFS4	O43181	175 aa		11.29	□□□□□ -0.6
APTX-233	ENST00000496030	TRIM13	O60858	407 aa		11.29	□□□□□ -0.6
APTX-233	ENST00000496030	DNAJB6	O75190	326 aa		11.29	□□□□□ -0.6
APTX-233	ENST00000496030	CLEC3A	O75596	197 aa		11.29	□□□□□ -0.6
APTX-233	ENST00000496030	B3GALT4	O96024	378 aa		11.29	□□□□□ -0.6
APTX-233	ENST00000496030	CCNYL3	P0C7X3	344 aa		11.29	□□□□□ -0.6
APTX-233	ENST00000496030	ALAS2	P22557	587 aa		11.29	□□□□□ -0.6
APTX-233	ENST00000496030	GSTM2	P28161	218 aa		11.29	□□□□□ -0.6
APTX-233	ENST00000496030	HNRNPH1	P31943	449 aa	Known RBP	11.29	□□□□□ -0.6
APTX-233	ENST00000496030	ARRB2	P32121	409 aa		11.29	□□□□□ -0.6
APTX-233	ENST00000496030	OR1D4	P47884	311 aa		11.29	□□□□□ -0.6
APTX-233	ENST00000496030	SERPINB4	P48594	390 aa		11.29	□□□□□ -0.6
APTX-233	ENST00000496030	CCNG1	P51959	295 aa		11.29	□□□□□ -0.6
APTX-233	ENST00000496030	SLC18A1	P54219	525 aa		11.29	□□□□□ -0.6
APTX-233	ENST00000496030	WDR4	P57081	412 aa	Known RBP	11.29	□□□□□ -0.6
APTX-233	ENST00000496030	FOXK1	P85037	733 aa		11.29	□□□□□ -0.6
APTX-233	ENST00000496030	LCP2	Q13094	533 aa		11.29	□□□□□ -0.6
APTX-233	ENST00000496030	ZRSR2	Q15696	482 aa	Known RBP	11.29	□□□□□ -0.6
APTX-233	ENST00000496030	CPSF6	Q16630	551 aa	Known RBP eCLIP	11.29	□□□□□ -0.6
APTX-233	ENST00000496030	TBR1	Q16650	682 aa		11.29	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms