RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 SLC6A19Q695T7 634 aa17.12■□□□□ 0.33
COL9A3-214ENST00000490398 DCAKDQ8WVC6 231 aa17.12■□□□□ 0.33
COL9A3-214ENST00000490398 THOC3Q96J01 351 aaKnown RBP17.12■□□□□ 0.33
COL9A3-214ENST00000490398 CD244Q9BZW8 370 aa17.12■□□□□ 0.33
COL9A3-214ENST00000490398 LANCL2Q9NS86 450 aa17.12■□□□□ 0.33
COL9A3-214ENST00000490398 NUDT4Q9NZJ9 180 aa17.12■□□□□ 0.33
COL9A3-214ENST00000490398 PLAAQ9Y263 795 aa17.12■□□□□ 0.33
COL9A3-214ENST00000490398 PCDHGB7Q9Y5F8 929 aa17.12■□□□□ 0.33
COL9A3-214ENST00000490398 SCN3AQ9NY46 2000 aa17.12■□□□□ 0.33
COL9A3-214ENST00000490398 A0A087X1B8 175 aa17.11■□□□□ 0.33
COL9A3-214ENST00000490398 LOC102723996A0A087X1L8 192 aa17.11■□□□□ 0.33
COL9A3-214ENST00000490398 A0A0G2JN53 185 aa17.11■□□□□ 0.33
COL9A3-214ENST00000490398 CHST10O43529 356 aa17.11■□□□□ 0.33
COL9A3-214ENST00000490398 CDC123O75794 336 aaPredicted RBP17.11■□□□□ 0.33
COL9A3-214ENST00000490398 IPO13O94829 963 aaKnown RBP17.11■□□□□ 0.33
COL9A3-214ENST00000490398 SORBS2O94875 1100 aaKnown RBP17.11■□□□□ 0.33
COL9A3-214ENST00000490398 HPP00738 406 aa17.11■□□□□ 0.33
COL9A3-214ENST00000490398 TYK2P29597 1187 aa17.11■□□□□ 0.33
COL9A3-214ENST00000490398 HNRNPH1P31943 449 aaKnown RBP17.11■□□□□ 0.33
COL9A3-214ENST00000490398 MAGEA12P43365 314 aa17.11■□□□□ 0.33
COL9A3-214ENST00000490398 SERPINB8P50452 374 aa17.11■□□□□ 0.33
COL9A3-214ENST00000490398 RGS1Q08116 209 aa17.11■□□□□ 0.33
COL9A3-214ENST00000490398 MFSD4BQ5TF39 518 aa17.11■□□□□ 0.33
COL9A3-214ENST00000490398 JMJD6Q6NYC1 403 aaPredicted RBP17.11■□□□□ 0.33
COL9A3-214ENST00000490398 TMIGD1Q6UXZ0 262 aa17.11■□□□□ 0.33
COL9A3-214ENST00000490398 CEP128Q6ZU80 1094 aa17.11■□□□□ 0.33
COL9A3-214ENST00000490398 NDUFAF7Q7L592 441 aa17.11■□□□□ 0.33
COL9A3-214ENST00000490398 PSMF1Q92530 271 aa17.11■□□□□ 0.33
COL9A3-214ENST00000490398 TSLPQ969D9 159 aa17.11■□□□□ 0.33
COL9A3-214ENST00000490398 VPS11Q9H270 941 aa17.11■□□□□ 0.33
COL9A3-214ENST00000490398 GPRC5BQ9NZH0 403 aa17.11■□□□□ 0.33
COL9A3-214ENST00000490398 COPG2Q9UBF2 871 aa17.11■□□□□ 0.33
COL9A3-214ENST00000490398 NUP210LQ5VU65 1888 aa17.11■□□□□ 0.33
COL9A3-214ENST00000490398 MYO18BQ8IUG5 2567 aa17.11■□□□□ 0.33
COL9A3-214ENST00000490398 NSG1A0A0A6YYJ2 146 aa17.1■□□□□ 0.33
COL9A3-214ENST00000490398 A0A1W2PQ72 361 aa17.1■□□□□ 0.33
COL9A3-214ENST00000490398 DPM1O60762 260 aa17.1■□□□□ 0.33
COL9A3-214ENST00000490398 KLHL2O95198 593 aa17.1■□□□□ 0.33
COL9A3-214ENST00000490398 S100BP04271 92 aaPredicted RBP17.1■□□□□ 0.33
COL9A3-214ENST00000490398 MYBL2P10244 700 aa17.1■□□□□ 0.33
COL9A3-214ENST00000490398 FOXK1P85037 733 aa17.1■□□□□ 0.33
COL9A3-214ENST00000490398 RHAGQ02094 409 aa17.1■□□□□ 0.33
COL9A3-214ENST00000490398 HERC3Q15034 1050 aa17.1■□□□□ 0.33
COL9A3-214ENST00000490398 PDK4Q16654 411 aa17.1■□□□□ 0.33
COL9A3-214ENST00000490398 PLEKHN1Q494U1 663 aaPredicted RBP17.1■□□□□ 0.33
COL9A3-214ENST00000490398 XKR6Q5GH73 641 aa17.1■□□□□ 0.33
COL9A3-214ENST00000490398 IFT20Q8IY31 132 aa17.1■□□□□ 0.33
COL9A3-214ENST00000490398 TBC1D19Q8N5T2 526 aa17.1■□□□□ 0.33
COL9A3-214ENST00000490398 TRPV3Q8NET8 790 aa17.1■□□□□ 0.33
COL9A3-214ENST00000490398 ISL2Q96A47 359 aa17.1■□□□□ 0.33
COL9A3-214ENST00000490398 WDR34Q96EX3 536 aa17.1■□□□□ 0.33
COL9A3-214ENST00000490398 WDR77Q9BQA1 342 aaPredicted RBP17.1■□□□□ 0.33
COL9A3-214ENST00000490398 TXLNGYQ9BZA5 131 aa17.1■□□□□ 0.33
COL9A3-214ENST00000490398 LHPPQ9H008 270 aa17.1■□□□□ 0.33
COL9A3-214ENST00000490398 ZNF700Q9H0M5 742 aa17.1■□□□□ 0.33
COL9A3-214ENST00000490398 TSPYL1Q9H0U9 437 aa17.1■□□□□ 0.33
COL9A3-214ENST00000490398 EPB41L4BQ9H329 900 aa17.1■□□□□ 0.33
COL9A3-214ENST00000490398 CNOT10Q9H9A5 744 aaKnown RBP17.1■□□□□ 0.33
COL9A3-214ENST00000490398 C5AR2Q9P296 337 aa17.1■□□□□ 0.33
COL9A3-214ENST00000490398 NBASA2RRP1 2371 aa17.1■□□□□ 0.33
COL9A3-214ENST00000490398 COL12A1Q99715 3063 aa17.1■□□□□ 0.33
COL9A3-214ENST00000490398 FAM227AF5H4B4 570 aa17.09■□□□□ 0.33
COL9A3-214ENST00000490398 CLGNO14967 610 aa17.09■□□□□ 0.33
COL9A3-214ENST00000490398 H2AFYO75367 372 aaKnown RBP17.09■□□□□ 0.33
COL9A3-214ENST00000490398 SERPINA6P08185 405 aa17.09■□□□□ 0.33
COL9A3-214ENST00000490398 INHBAP08476 426 aa17.09■□□□□ 0.33
COL9A3-214ENST00000490398 C8orf89P0DMQ9 161 aa17.09■□□□□ 0.33
COL9A3-214ENST00000490398 CXCR2P25025 360 aa17.09■□□□□ 0.33
COL9A3-214ENST00000490398 MSH2P43246 934 aa17.09■□□□□ 0.33
COL9A3-214ENST00000490398 CHIT1Q13231 466 aa17.09■□□□□ 0.33
COL9A3-214ENST00000490398 FAM83EQ2M2I3 478 aa17.09■□□□□ 0.33
COL9A3-214ENST00000490398 TECRLQ5HYJ1 363 aa17.09■□□□□ 0.33
COL9A3-214ENST00000490398 LRRC70Q7Z2Q7 622 aa17.09■□□□□ 0.33
COL9A3-214ENST00000490398 ANKRD37Q7Z713 158 aa17.09■□□□□ 0.33
COL9A3-214ENST00000490398 RHEBL1Q8TAI7 183 aa17.09■□□□□ 0.33
COL9A3-214ENST00000490398 UBTD2Q8WUN7 234 aa17.09■□□□□ 0.33
COL9A3-214ENST00000490398 MIB2Q96AX9 1013 aa17.09■□□□□ 0.33
COL9A3-214ENST00000490398 IMMP1LQ96LU5 166 aa17.09■□□□□ 0.33
COL9A3-214ENST00000490398 NT5DC2Q9H857 520 aa17.09■□□□□ 0.33
COL9A3-214ENST00000490398 G3BP2Q9UN86 482 aaKnown RBP17.09■□□□□ 0.33
COL9A3-214ENST00000490398 A0A087WUV0 522 aaPredicted RBP17.08■□□□□ 0.32
COL9A3-214ENST00000490398 LRIT2A6NDA9 550 aa17.08■□□□□ 0.32
COL9A3-214ENST00000490398 TRIM49D1C9J1S8 452 aa17.08■□□□□ 0.32
COL9A3-214ENST00000490398 K7EPI3 171 aa17.08■□□□□ 0.32
COL9A3-214ENST00000490398 RIPK2O43353 540 aa17.08■□□□□ 0.32
COL9A3-214ENST00000490398 WFS1O76024 890 aa17.08■□□□□ 0.32
COL9A3-214ENST00000490398 SEC24DO94855 1032 aaPredicted RBP17.08■□□□□ 0.32
COL9A3-214ENST00000490398 SIX3O95343 332 aaPredicted RBP17.08■□□□□ 0.32
COL9A3-214ENST00000490398 PRR35P0CG20 571 aa17.08■□□□□ 0.32
COL9A3-214ENST00000490398 RUNX2Q13950 521 aa17.08■□□□□ 0.32
COL9A3-214ENST00000490398 E2F2Q14209 437 aa17.08■□□□□ 0.32
COL9A3-214ENST00000490398 ACAP2Q15057 778 aa17.08■□□□□ 0.32
COL9A3-214ENST00000490398 IGFL3Q6UXB1 125 aa17.08■□□□□ 0.32
COL9A3-214ENST00000490398 LINC00696Q6ZRV3 163 aa17.08■□□□□ 0.32
COL9A3-214ENST00000490398 ABHD13Q7L211 337 aa17.08■□□□□ 0.32
COL9A3-214ENST00000490398 KBTBD2Q8IY47 623 aa17.08■□□□□ 0.32
COL9A3-214ENST00000490398 CA13Q8N1Q1 262 aa17.08■□□□□ 0.32
COL9A3-214ENST00000490398 RNF175Q8N4F7 328 aa17.08■□□□□ 0.32
COL9A3-214ENST00000490398 BRIX1Q8TDN6 353 aaKnown RBP17.08■□□□□ 0.32
COL9A3-214ENST00000490398 CCT6BQ92526 530 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms