RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 MYLK4Q86YV6 388 aaPredicted RBP8.63□□□□□ -1.03
HDAC6-232ENST00000489053 CISD2Q8N5K1 135 aaKnown RBP8.63□□□□□ -1.03
HDAC6-232ENST00000489053 SIRT6Q8N6T7 355 aa8.63□□□□□ -1.03
HDAC6-232ENST00000489053 RBMXL3Q8N7X1 1067 aaKnown RBP8.63□□□□□ -1.03
HDAC6-232ENST00000489053 ZNF740Q8NDX6 193 aa8.63□□□□□ -1.03
HDAC6-232ENST00000489053 OR4K1Q8NGD4 311 aa8.63□□□□□ -1.03
HDAC6-232ENST00000489053 BRIX1Q8TDN6 353 aaKnown RBP8.63□□□□□ -1.03
HDAC6-232ENST00000489053 PPP4R1Q8TF05 950 aa8.63□□□□□ -1.03
HDAC6-232ENST00000489053 UBE2E3Q969T4 207 aa8.63□□□□□ -1.03
HDAC6-232ENST00000489053 TBC1D20Q96BZ9 403 aa8.63□□□□□ -1.03
HDAC6-232ENST00000489053 RHBDF1Q96CC6 855 aa8.63□□□□□ -1.03
HDAC6-232ENST00000489053 TM4SF19Q96DZ7 209 aa8.63□□□□□ -1.03
HDAC6-232ENST00000489053 OR4K3Q96R72 315 aa8.63□□□□□ -1.03
HDAC6-232ENST00000489053 OR1F2PQ96R84 312 aa8.63□□□□□ -1.03
HDAC6-232ENST00000489053 FMO2Q99518 471 aa8.63□□□□□ -1.03
HDAC6-232ENST00000489053 LPAR4Q99677 370 aa8.63□□□□□ -1.03
HDAC6-232ENST00000489053 CENPKQ9BS16 269 aa8.63□□□□□ -1.03
HDAC6-232ENST00000489053 EFCAB11Q9BUY7 163 aa8.63□□□□□ -1.03
HDAC6-232ENST00000489053 VN1R1Q9GZP7 353 aa8.63□□□□□ -1.03
HDAC6-232ENST00000489053 ZNF700Q9H0M5 742 aa8.63□□□□□ -1.03
HDAC6-232ENST00000489053 ALG9Q9H6U8 611 aa8.63□□□□□ -1.03
HDAC6-232ENST00000489053 LRRC4CQ9HCJ2 640 aa8.63□□□□□ -1.03
HDAC6-232ENST00000489053 GPRC5BQ9NZH0 403 aa8.63□□□□□ -1.03
HDAC6-232ENST00000489053 NUDT4Q9NZJ9 180 aa8.63□□□□□ -1.03
HDAC6-232ENST00000489053 OPTCQ9UBM4 332 aa8.63□□□□□ -1.03
HDAC6-232ENST00000489053 MRPS33Q9Y291 106 aaKnown RBP8.63□□□□□ -1.03
HDAC6-232ENST00000489053 COL12A1Q99715 3063 aa8.63□□□□□ -1.03
HDAC6-232ENST00000489053 IGHV1-45A0A0A0MS14 117 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 TRAV17A0A0B4J275 112 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 ERI3O43414 337 aaKnown RBP8.62□□□□□ -1.03
HDAC6-232ENST00000489053 B3GALT2O43825 422 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 PRMT3O60678 531 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 GALR3O60755 368 aaPredicted RBP8.62□□□□□ -1.03
HDAC6-232ENST00000489053 JRKO75564 520 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 KRT38O76015 456 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 SEC24DO94855 1032 aaPredicted RBP8.62□□□□□ -1.03
HDAC6-232ENST00000489053 SORBS2O94875 1100 aaKnown RBP8.62□□□□□ -1.03
HDAC6-232ENST00000489053 ACSL3O95573 720 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 SERPINA6P08185 405 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 C1GALT1C1LP0DN25 315 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 RNH1P13489 461 aaKnown RBP8.62□□□□□ -1.03
HDAC6-232ENST00000489053 CD1DP15813 335 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 TYK2P29597 1187 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 GDF5P43026 501 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 HSPA7P48741 367 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 OR4D2P58180 307 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 OLR1P78380 273 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 BTN3A2P78410 334 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 PHEXP78562 749 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 ZNF33BQ06732 778 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 BMPR2Q13873 1038 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 UBAP2LQ14157 1087 aaKnown RBP8.62□□□□□ -1.03
HDAC6-232ENST00000489053 ZNF169Q14929 603 aaPredicted RBP8.62□□□□□ -1.03
HDAC6-232ENST00000489053 EFTUD2Q15029 972 aaKnown RBP eCLIP8.62□□□□□ -1.03
HDAC6-232ENST00000489053 EXT1Q16394 746 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 PLEKHN1Q494U1 663 aaPredicted RBP8.62□□□□□ -1.03
HDAC6-232ENST00000489053 MROH9Q5TGP6 573 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 TRIM40Q6P9F5 258 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 ZDHHC24Q6UX98 284 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 PRSS41Q7RTY9 318 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 LRRC70Q7Z2Q7 622 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 CPEB2Q7Z5Q1 589 aaKnown RBP8.62□□□□□ -1.03
HDAC6-232ENST00000489053 CMC1Q7Z7K0 106 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 MMGT1Q8N4V1 131 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 FAM26EQ8N5C1 309 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 CEP112Q8N8E3 955 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 OR1N1Q8NGS0 311 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 NT5CQ8TCD5 201 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 ADAMTS18Q8TE60 1221 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 KIAA1191Q96A73 305 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 PTCD3Q96EY7 689 aaKnown RBP8.62□□□□□ -1.03
HDAC6-232ENST00000489053 SEC16BQ96JE7 1060 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 PTCHD1Q96NR3 888 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 LMF1Q96S06 567 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 PITHD1Q9GZP4 211 aaPredicted RBP8.62□□□□□ -1.03
HDAC6-232ENST00000489053 VPS11Q9H270 941 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 SYNPO2LQ9H987 977 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 CLK4Q9HAZ1 481 aaKnown RBP8.62□□□□□ -1.03
HDAC6-232ENST00000489053 KCNK13Q9HB14 408 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 IKZF3Q9UKT9 509 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 SPACA6W5XKT8 324 aa8.62□□□□□ -1.03
HDAC6-232ENST00000489053 PTPN13Q12923 2485 aa8.61□□□□□ -1.03
HDAC6-232ENST00000489053 MAGEB17A8MXT2 336 aa8.61□□□□□ -1.03
HDAC6-232ENST00000489053 CLDN4O14493 209 aa8.61□□□□□ -1.03
HDAC6-232ENST00000489053 CHST10O43529 356 aa8.61□□□□□ -1.03
HDAC6-232ENST00000489053 KERAO60938 352 aa8.61□□□□□ -1.03
HDAC6-232ENST00000489053 FAM155BO75949 473 aa8.61□□□□□ -1.03
HDAC6-232ENST00000489053 PCNAP12004 261 aa8.61□□□□□ -1.03
HDAC6-232ENST00000489053 EPB42P16452 691 aa8.61□□□□□ -1.03
HDAC6-232ENST00000489053 GNLYP22749 145 aa8.61□□□□□ -1.03
HDAC6-232ENST00000489053 MSH2P43246 934 aa8.61□□□□□ -1.03
HDAC6-232ENST00000489053 SLC6A12P48065 614 aa8.61□□□□□ -1.03
HDAC6-232ENST00000489053 CD97P48960 835 aa8.61□□□□□ -1.03
HDAC6-232ENST00000489053 SERPINB9P50453 376 aa8.61□□□□□ -1.03
HDAC6-232ENST00000489053 NR6A1Q15406 480 aa8.61□□□□□ -1.03
HDAC6-232ENST00000489053 OR4D1Q15615 310 aa8.61□□□□□ -1.03
HDAC6-232ENST00000489053 TRADDQ15628 312 aa8.61□□□□□ -1.03
HDAC6-232ENST00000489053 ZKSCAN8Q15776 578 aaPredicted RBP8.61□□□□□ -1.03
HDAC6-232ENST00000489053 C18orf21Q32NC0 220 aaPredicted RBP8.61□□□□□ -1.03
HDAC6-232ENST00000489053 PRR30Q53SZ7 412 aaPredicted RBP8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms