RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 ATG9BQ674R7 924 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 CAPN13Q6MZZ7 669 aaPredicted RBP5.43□□□□□ -1.54
CUX1-208ENST00000485792 METTL2BQ6P1Q9 378 aaKnown RBP5.43□□□□□ -1.54
CUX1-208ENST00000485792 PRMT9Q6P2P2 845 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 BORAQ6PGQ7 559 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 LINC00114Q6XXX2 140 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 TIFABQ6ZNK6 161 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 TRMT10CQ7L0Y3 403 aaKnown RBP5.43□□□□□ -1.54
CUX1-208ENST00000485792 GPR135Q8IZ08 494 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 CNPY4Q8N129 248 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 ZNF843Q8N446 348 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 RNF175Q8N4F7 328 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 ZNF655Q8N720 491 aaPredicted RBP5.43□□□□□ -1.54
CUX1-208ENST00000485792 ENDOVQ8N8Q3 282 aaKnown RBP5.43□□□□□ -1.54
CUX1-208ENST00000485792 TMEM102Q8N9M5 508 aaPredicted RBP5.43□□□□□ -1.54
CUX1-208ENST00000485792 ANKRD53Q8N9V6 530 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 UHMK1Q8TAS1 419 aaKnown RBP5.43□□□□□ -1.54
CUX1-208ENST00000485792 EPS8L3Q8TE67 593 aaKnown RBP5.43□□□□□ -1.54
CUX1-208ENST00000485792 CREB3L4Q8TEY5 395 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 UBTD2Q8WUN7 234 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 DCAKDQ8WVC6 231 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 SKA2Q8WVK7 121 aaPredicted RBP5.43□□□□□ -1.54
CUX1-208ENST00000485792 THAP4Q8WY91 577 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 NEIL2Q969S2 332 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 KIAA1143Q96AT1 154 aaPredicted RBP5.43□□□□□ -1.54
CUX1-208ENST00000485792 TSPAN17Q96FV3 270 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 SEC16BQ96JE7 1060 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 PRAP1Q96NZ9 151 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 IP6K3Q96PC2 410 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 C17orf62Q9BQA9 187 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 SELENOSQ9BQE4 189 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 HAUS8Q9BT25 410 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 BHLHE41Q9C0J9 482 aaPredicted RBP5.43□□□□□ -1.54
CUX1-208ENST00000485792 PITHD1Q9GZP4 211 aaPredicted RBP5.43□□□□□ -1.54
CUX1-208ENST00000485792 ATG10Q9H0Y0 220 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 NT5DC2Q9H857 520 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 PELI2Q9HAT8 420 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 ACSS2Q9NR19 701 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 CUTCQ9NTM9 273 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 ARL15Q9NXU5 204 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 NOP53Q9NZM5 478 aaKnown RBP5.43□□□□□ -1.54
CUX1-208ENST00000485792 TRIM33Q9UPN9 1127 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 RUVBL1Q9Y265 456 aaKnown RBP5.43□□□□□ -1.54
CUX1-208ENST00000485792 TSC22D4Q9Y3Q8 395 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 PCDHGA9Q9Y5G4 932 aaKnown RBP5.43□□□□□ -1.54
CUX1-208ENST00000485792 CSAG2Q9Y5P2 127 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 SLC22A7Q9Y694 548 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 USP9YO00507 2555 aaPredicted RBP5.43□□□□□ -1.54
CUX1-208ENST00000485792 UTP20O75691 2785 aaKnown RBP5.43□□□□□ -1.54
CUX1-208ENST00000485792 ICE1Q9Y2F5 2266 aa5.43□□□□□ -1.54
CUX1-208ENST00000485792 SPTAN1Q13813 2472 aaKnown RBP5.42□□□□□ -1.54
CUX1-208ENST00000485792 CRYBG3Q68DQ2 2970 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 CACNA1CQ13936 2221 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 LOC102723996A0A087X1L8 192 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 A0A0J9YVX5 310 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 TRBC2A0A5B9 178 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 FEZF1A0PJY2 475 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 CYSRT1A8MQ03 144 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 H0YIG0 161 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 SOCS6O14544 535 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 MAP2K7O14733 419 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 PCDH17O14917 1159 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 KERAO60938 352 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 JRKO75564 520 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 RFPL1O75677 317 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 KLHL2O95198 593 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 NSA2O95478 260 aaKnown RBP5.42□□□□□ -1.54
CUX1-208ENST00000485792 IGHA1P01876 353 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 C2P06681 752 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 CELA2AP08217 269 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 ANXA5P08758 320 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 HIST1H2AGP0C0S8 130 aaPredicted RBP5.42□□□□□ -1.54
CUX1-208ENST00000485792 PRKAR1AP10644 381 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 SFTPCP11686 197 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 COL6A2P12110 1019 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 HIST1H2ADP20671 130 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 MMP11P24347 488 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 CNTFP26441 200 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 AGTR2P50052 363 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 POLE2P56282 527 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 RPS15P62841 145 aaKnown RBP5.42□□□□□ -1.54
CUX1-208ENST00000485792 REEP5Q00765 189 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 PWP1Q13610 501 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 USP10Q14694 798 aaKnown RBP5.42□□□□□ -1.54
CUX1-208ENST00000485792 SLMAPQ14BN4 828 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 ACAP2Q15057 778 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 MUM1Q2TAK8 710 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 CES4AQ5XG92 561 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 SULT1C3Q6IMI6 304 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 TCTN3Q6NUS6 607 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 TMEM205Q6UW68 189 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 IGFL2Q6UWQ7 119 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 TTLL10Q6ZVT0 673 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 RPS27LQ71UM5 84 aaKnown RBP5.42□□□□□ -1.54
CUX1-208ENST00000485792 PPP1R32Q7Z5V6 425 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 THOC6Q86W42 341 aaKnown RBP5.42□□□□□ -1.54
CUX1-208ENST00000485792 C17orf64Q86WR6 236 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 IFT20Q8IY31 132 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 TCAIMQ8N3R3 496 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 PPM1NQ8N819 430 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms