RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 GPAMQ9HCL2 828 aa13.28□□□□□ -0.28
UPF3A-204ENST00000475218 PLEKHB1Q9UF11 243 aaPredicted RBP13.28□□□□□ -0.28
UPF3A-204ENST00000475218 SVILO95425 2214 aa13.28□□□□□ -0.28
UPF3A-204ENST00000475218 ZGRF1Q86YA3 2104 aa13.28□□□□□ -0.28
UPF3A-204ENST00000475218 EIF3HO15372 352 aaKnown RBP eCLIP13.27□□□□□ -0.285e-6■■■□□ 14.9
UPF3A-204ENST00000475218 PHGDHO43175 533 aaKnown RBP13.27□□□□□ -0.28
UPF3A-204ENST00000475218 CHST10O43529 356 aa13.27□□□□□ -0.28
UPF3A-204ENST00000475218 WISP2O76076 250 aa13.27□□□□□ -0.28
UPF3A-204ENST00000475218 ST13P50502 369 aaKnown RBP13.27□□□□□ -0.28
UPF3A-204ENST00000475218 TDGF1P3P51864 188 aa13.27□□□□□ -0.28
UPF3A-204ENST00000475218 ETF1P62495 437 aaKnown RBP13.27□□□□□ -0.28
UPF3A-204ENST00000475218 ARG2P78540 354 aa13.27□□□□□ -0.28
UPF3A-204ENST00000475218 SRSF11Q05519 484 aaKnown RBP13.27□□□□□ -0.28
UPF3A-204ENST00000475218 HERC3Q15034 1050 aa13.27□□□□□ -0.28
UPF3A-204ENST00000475218 OR4D1Q15615 310 aa13.27□□□□□ -0.28
UPF3A-204ENST00000475218 MFSD4BQ5TF39 518 aa13.27□□□□□ -0.28
UPF3A-204ENST00000475218 FCRLBQ6BAA4 426 aa13.27□□□□□ -0.28
UPF3A-204ENST00000475218 CYS1Q717R9 158 aa13.27□□□□□ -0.28
UPF3A-204ENST00000475218 ZNF572Q7Z3I7 529 aaPredicted RBP13.27□□□□□ -0.28
UPF3A-204ENST00000475218 MTERF4Q7Z6M4 381 aaKnown RBP13.27□□□□□ -0.28
UPF3A-204ENST00000475218 HOMEZQ8IX15 550 aa13.27□□□□□ -0.28
UPF3A-204ENST00000475218 BBOF1Q8ND07 529 aa13.27□□□□□ -0.28
UPF3A-204ENST00000475218 PLPP5Q8NEB5 264 aa13.27□□□□□ -0.28
UPF3A-204ENST00000475218 OR1F2PQ96R84 312 aa13.27□□□□□ -0.28
UPF3A-204ENST00000475218 RBBP8Q99708 897 aa13.27□□□□□ -0.28
UPF3A-204ENST00000475218 RNF32Q9H0A6 362 aa13.27□□□□□ -0.28
UPF3A-204ENST00000475218 NSMCE4AQ9NXX6 385 aa13.27□□□□□ -0.28
UPF3A-204ENST00000475218 CTNNAL1Q9UBT7 734 aa13.27□□□□□ -0.28
UPF3A-204ENST00000475218 ITPR2Q14571 2701 aa13.27□□□□□ -0.28
UPF3A-204ENST00000475218 CROCCQ5TZA2 2017 aa13.27□□□□□ -0.29
UPF3A-204ENST00000475218 FAM155BO75949 473 aa13.27□□□□□ -0.29
UPF3A-204ENST00000475218 CLDN1O95832 211 aa13.27□□□□□ -0.29
UPF3A-204ENST00000475218 SERPIND1P05546 499 aa13.27□□□□□ -0.29
UPF3A-204ENST00000475218 EPORP19235 508 aa13.27□□□□□ -0.29
UPF3A-204ENST00000475218 KCNC1P48547 511 aa13.27□□□□□ -0.29
UPF3A-204ENST00000475218 RAB8AP61006 207 aa13.27□□□□□ -0.29
UPF3A-204ENST00000475218 POU4F1Q01851 419 aa13.27□□□□□ -0.29
UPF3A-204ENST00000475218 ABRAXAS2Q15018 415 aa13.27□□□□□ -0.29
UPF3A-204ENST00000475218 TGFBIQ15582 683 aa13.27□□□□□ -0.29
UPF3A-204ENST00000475218 ZKSCAN8Q15776 578 aaPredicted RBP13.27□□□□□ -0.29
UPF3A-204ENST00000475218 BTBD16Q32M84 506 aa13.27□□□□□ -0.29
UPF3A-204ENST00000475218 FBXO48Q5FWF7 155 aa13.27□□□□□ -0.29
UPF3A-204ENST00000475218 ADNP2Q6IQ32 1131 aa13.27□□□□□ -0.29
UPF3A-204ENST00000475218 SYT10Q6XYQ8 523 aa13.27□□□□□ -0.29
UPF3A-204ENST00000475218 MAATS1Q7Z4T9 603 aa13.27□□□□□ -0.29
UPF3A-204ENST00000475218 VN1R5Q7Z5H4 357 aa13.27□□□□□ -0.29
UPF3A-204ENST00000475218 ADAMTSL2Q86TH1 951 aa13.27□□□□□ -0.29
UPF3A-204ENST00000475218 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.27□□□□□ -0.29
UPF3A-204ENST00000475218 FBXO25Q8TCJ0 367 aa13.27□□□□□ -0.29
UPF3A-204ENST00000475218 METTL21AQ8WXB1 218 aa13.27□□□□□ -0.29
UPF3A-204ENST00000475218 UBXN10Q96LJ8 280 aa13.27□□□□□ -0.29
UPF3A-204ENST00000475218 AGPAT4Q9NRZ5 378 aa13.27□□□□□ -0.29
UPF3A-204ENST00000475218 ASB1Q9Y576 335 aa13.27□□□□□ -0.29
UPF3A-204ENST00000475218 A1L4Q6 167 aa13.26□□□□□ -0.29
UPF3A-204ENST00000475218 DYTNA2CJ06 578 aa13.26□□□□□ -0.29
UPF3A-204ENST00000475218 PABPN1LA6NDY0 278 aaKnown RBP13.26□□□□□ -0.29
UPF3A-204ENST00000475218 MAGEB17A8MXT2 336 aa13.26□□□□□ -0.29
UPF3A-204ENST00000475218 FAM227AF5H4B4 570 aa13.26□□□□□ -0.29
UPF3A-204ENST00000475218 WFS1O76024 890 aa13.26□□□□□ -0.29
UPF3A-204ENST00000475218 WDR47O94967 919 aa13.26□□□□□ -0.29
UPF3A-204ENST00000475218 FHP07954 510 aa13.26□□□□□ -0.29
UPF3A-204ENST00000475218 ICAM2P13598 275 aa13.26□□□□□ -0.29
UPF3A-204ENST00000475218 CD1DP15813 335 aa13.26□□□□□ -0.29
UPF3A-204ENST00000475218 HNF4AP41235 474 aa13.26□□□□□ -0.29
UPF3A-204ENST00000475218 AGTR2P50052 363 aa13.26□□□□□ -0.29
UPF3A-204ENST00000475218 HNMTP50135 292 aa13.26□□□□□ -0.29
UPF3A-204ENST00000475218 BTG2P78543 158 aa13.26□□□□□ -0.29
UPF3A-204ENST00000475218 GUCY2DQ02846 1103 aa13.26□□□□□ -0.29
UPF3A-204ENST00000475218 CALCOCO2Q13137 446 aa13.26□□□□□ -0.29
UPF3A-204ENST00000475218 SFT2D3Q587I9 215 aa13.26□□□□□ -0.29
UPF3A-204ENST00000475218 C3orf62Q6ZUJ4 267 aa13.26□□□□□ -0.29
UPF3A-204ENST00000475218 ESAMQ96AP7 390 aa13.26□□□□□ -0.29
UPF3A-204ENST00000475218 TBC1D20Q96BZ9 403 aa13.26□□□□□ -0.29
UPF3A-204ENST00000475218 CPNE1Q99829 537 aa13.26□□□□□ -0.29
UPF3A-204ENST00000475218 EGFL8Q99944 293 aa13.26□□□□□ -0.29
UPF3A-204ENST00000475218 AIF1LQ9BQI0 150 aa13.26□□□□□ -0.29
UPF3A-204ENST00000475218 COPG2Q9UBF2 871 aa13.26□□□□□ -0.29
UPF3A-204ENST00000475218 DYRK1BQ9Y463 629 aa13.26□□□□□ -0.29
UPF3A-204ENST00000475218 KCNE2Q9Y6J6 123 aa13.26□□□□□ -0.29
UPF3A-204ENST00000475218 IGKV3D-11A0A0A0MRZ8 115 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 NCF1BA6NI72 391 aaPredicted RBP13.25□□□□□ -0.29
UPF3A-204ENST00000475218 NCF1CA8MVU1 366 aaPredicted RBP13.25□□□□□ -0.29
UPF3A-204ENST00000475218 CCDC166P0CW27 439 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 C1GALT1C1LP0DN25 315 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 EDN3P14138 238 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 NCF1P14598 390 aaPredicted RBP13.25□□□□□ -0.29
UPF3A-204ENST00000475218 CD22P20273 847 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 IL10P22301 178 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 CASQ1P31415 396 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 HNRNPH1P31943 449 aaKnown RBP13.25□□□□□ -0.29
UPF3A-204ENST00000475218 GGT5P36269 586 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 GP5P40197 560 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 PLTPP55058 493 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 DLG1Q12959 904 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 USP10Q14694 798 aaKnown RBP13.25□□□□□ -0.29
UPF3A-204ENST00000475218 EFTUD2Q15029 972 aaKnown RBP eCLIP13.25□□□□□ -0.294e-7■■■□□ 19.2
UPF3A-204ENST00000475218 NSDHLQ15738 373 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 KBTBD12Q3ZCT8 623 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 UBAP2Q5T6F2 1119 aaKnown RBP13.25□□□□□ -0.29
UPF3A-204ENST00000475218 PAPD4Q6PIY7 484 aaKnown RBP13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms