RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 PCDH17O14917 1159 aa13.45□□□□□ -0.26
VAMP4-203ENST00000474047 GALR3O60755 368 aaPredicted RBP13.45□□□□□ -0.26
VAMP4-203ENST00000474047 SMIM24O75264 130 aa13.45□□□□□ -0.26
VAMP4-203ENST00000474047 GSTM2P28161 218 aa13.45□□□□□ -0.26
VAMP4-203ENST00000474047 ARL1P40616 181 aaPredicted RBP13.45□□□□□ -0.26
VAMP4-203ENST00000474047 CSRP3P50461 194 aa13.45□□□□□ -0.26
VAMP4-203ENST00000474047 SETDB1Q15047 1291 aa13.45□□□□□ -0.26
VAMP4-203ENST00000474047 ADGRD1Q6QNK2 874 aa13.45□□□□□ -0.26
VAMP4-203ENST00000474047 PLD6Q8N2A8 252 aaKnown RBP13.45□□□□□ -0.26
VAMP4-203ENST00000474047 OR11G2Q8NGC1 345 aa13.45□□□□□ -0.26
VAMP4-203ENST00000474047 UTP15Q8TED0 518 aaKnown RBP13.45□□□□□ -0.26
VAMP4-203ENST00000474047 UBTD2Q8WUN7 234 aa13.45□□□□□ -0.26
VAMP4-203ENST00000474047 UBE2E3Q969T4 207 aa13.45□□□□□ -0.26
VAMP4-203ENST00000474047 C8orf44Q96CB5 159 aa13.45□□□□□ -0.26
VAMP4-203ENST00000474047 PEX11GQ96HA9 241 aa13.45□□□□□ -0.26
VAMP4-203ENST00000474047 TMCO1Q9UM00 188 aa13.45□□□□□ -0.26
VAMP4-203ENST00000474047 PCDHGB7Q9Y5F8 929 aa13.45□□□□□ -0.26
VAMP4-203ENST00000474047 A0A088AWK7 358 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 NSG1A0A0A6YYJ2 146 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 MASP2O00187 686 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 PSMD12O00232 456 aaPredicted RBP13.44□□□□□ -0.26
VAMP4-203ENST00000474047 ZNF500O60304 480 aaPredicted RBP13.44□□□□□ -0.26
VAMP4-203ENST00000474047 ALOX12BO75342 701 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 JRKO75564 520 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 CEACAM4O75871 244 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 HPP00738 406 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 UQCRHP07919 91 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 C8orf89P0DMQ9 161 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 PCNAP12004 261 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 MTHFD2P13995 350 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 ZNF10P21506 573 aaPredicted RBP13.44□□□□□ -0.26
VAMP4-203ENST00000474047 IL10P22301 178 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 SNRPNP63162 240 aaKnown RBP13.44□□□□□ -0.26
VAMP4-203ENST00000474047 EEF1A2Q05639 463 aaKnown RBP13.44□□□□□ -0.26
VAMP4-203ENST00000474047 MYBPC3Q14896 1274 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 TECRLQ5HYJ1 363 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 PDSS2Q86YH6 399 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 CNPY4Q8N129 248 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 CREB3L4Q8TEY5 395 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.44□□□□□ -0.26
VAMP4-203ENST00000474047 ISL2Q96A47 359 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 SEC16BQ96JE7 1060 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 GPR78Q96P69 363 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 NUDT9Q9BW91 350 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 SLC6A16Q9GZN6 736 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 KLHL31Q9H511 634 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 ZNF160Q9HCG1 818 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 ZNF358Q9NW07 568 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 PSMC3IPQ9P2W1 217 aaPredicted RBP13.44□□□□□ -0.26
VAMP4-203ENST00000474047 C19orf25Q9UFG5 118 aaPredicted RBP13.44□□□□□ -0.26
VAMP4-203ENST00000474047 ASB1Q9Y576 335 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 SUV39H1O43463 412 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 CHST10O43529 356 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 DPM1O60762 260 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 CLEC3AO75596 197 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 B3GALT4O96024 378 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 MYBL2P10244 700 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 MAGEA12P43365 314 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 PIK3CGP48736 1102 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 OLR1P78380 273 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 BTN3A2P78410 334 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 TGM3Q08188 693 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 TBCCQ15814 346 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 VWA5B1Q5TIE3 1220 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 MED27Q6P2C8 311 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 NDUFAF7Q7L592 441 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 AFAP1L2Q8N4X5 818 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 OR5T3Q8NGG3 340 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 ATP6V1E2Q96A05 226 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 PHF21BQ96EK2 531 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 THOC3Q96J01 351 aaKnown RBP13.44□□□□□ -0.26
VAMP4-203ENST00000474047 RBCK1Q9BYM8 510 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 TXLNGYQ9BZA5 131 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 VN1R1Q9GZP7 353 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 RHBGQ9H310 441 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 ACTR8Q9H981 624 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 TBK1Q9UHD2 729 aa13.44□□□□□ -0.26
VAMP4-203ENST00000474047 TNRC6AQ8NDV7 1962 aaKnown RBP13.43□□□□□ -0.26
VAMP4-203ENST00000474047 ESPNB1AK53 854 aa13.43□□□□□ -0.26
VAMP4-203ENST00000474047 ERI3O43414 337 aaKnown RBP13.43□□□□□ -0.26
VAMP4-203ENST00000474047 CDC123O75794 336 aaPredicted RBP13.43□□□□□ -0.26
VAMP4-203ENST00000474047 SLU7O95391 586 aaKnown RBP13.43□□□□□ -0.26
VAMP4-203ENST00000474047 PDGFAP04085 211 aa13.43□□□□□ -0.26
VAMP4-203ENST00000474047 JAK1P23458 1154 aa13.43□□□□□ -0.26
VAMP4-203ENST00000474047 TNFRSF8P28908 595 aa13.43□□□□□ -0.26
VAMP4-203ENST00000474047 GTF2H2Q13888 395 aa13.43□□□□□ -0.26
VAMP4-203ENST00000474047 COLEC12Q5KU26 742 aa13.43□□□□□ -0.26
VAMP4-203ENST00000474047 GTF2H2CQ6P1K8 395 aa13.43□□□□□ -0.26
VAMP4-203ENST00000474047 TRIM40Q6P9F5 258 aa13.43□□□□□ -0.26
VAMP4-203ENST00000474047 HPS6Q86YV9 775 aa13.43□□□□□ -0.26
VAMP4-203ENST00000474047 PTGR2Q8N8N7 351 aaPredicted RBP13.43□□□□□ -0.26
VAMP4-203ENST00000474047 TM9SF4Q92544 642 aa13.43□□□□□ -0.26
VAMP4-203ENST00000474047 GAL3ST3Q96A11 431 aa13.43□□□□□ -0.26
VAMP4-203ENST00000474047 TBC1D20Q96BZ9 403 aa13.43□□□□□ -0.26
VAMP4-203ENST00000474047 WDR34Q96EX3 536 aa13.43□□□□□ -0.26
VAMP4-203ENST00000474047 OR1F2PQ96R84 312 aa13.43□□□□□ -0.26
VAMP4-203ENST00000474047 MRPL57Q9BQC6 102 aaKnown RBP13.43□□□□□ -0.26
VAMP4-203ENST00000474047 REXO4Q9GZR2 422 aaKnown RBP13.43□□□□□ -0.26
VAMP4-203ENST00000474047 MRPL46Q9H2W6 279 aaKnown RBP13.43□□□□□ -0.26
VAMP4-203ENST00000474047 COPS7BQ9H9Q2 264 aaPredicted RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms