RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 NAPGQ99747 312 aaPredicted RBP17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 MMP25Q9NPA2 562 aa17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 ABI3Q9P2A4 366 aa17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 ZFP69BQ9UJL9 534 aa17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 C4orf51C9J302 202 aa17.67■□□□□ 0.42
CCDC88B-206ENST00000473405 CCDC188H7C350 402 aa17.67■□□□□ 0.42
CCDC88B-206ENST00000473405 CHST10O43529 356 aa17.67■□□□□ 0.42
CCDC88B-206ENST00000473405 RASAL1O95294 804 aa17.67■□□□□ 0.42
CCDC88B-206ENST00000473405 SERPIND1P05546 499 aa17.67■□□□□ 0.42
CCDC88B-206ENST00000473405 AHRP35869 848 aa17.67■□□□□ 0.42
CCDC88B-206ENST00000473405 PER3P56645 1201 aa17.67■□□□□ 0.42
CCDC88B-206ENST00000473405 PMP22Q01453 160 aa17.67■□□□□ 0.42
CCDC88B-206ENST00000473405 USP10Q14694 798 aaKnown RBP17.67■□□□□ 0.42
CCDC88B-206ENST00000473405 ZRSR2Q15696 482 aaKnown RBP17.67■□□□□ 0.42
CCDC88B-206ENST00000473405 FJX1Q86VR8 437 aa17.67■□□□□ 0.42
CCDC88B-206ENST00000473405 CRLF3Q8IUI8 442 aa17.67■□□□□ 0.42
CCDC88B-206ENST00000473405 LURAP1LQ8IV03 231 aa17.67■□□□□ 0.42
CCDC88B-206ENST00000473405 CEP97Q8IW35 865 aa17.67■□□□□ 0.42
CCDC88B-206ENST00000473405 SUN3Q8TAQ9 357 aa17.67■□□□□ 0.42
CCDC88B-206ENST00000473405 UTP15Q8TED0 518 aaKnown RBP17.67■□□□□ 0.42
CCDC88B-206ENST00000473405 ANKRD7Q92527 254 aa17.67■□□□□ 0.42
CCDC88B-206ENST00000473405 TBC1D20Q96BZ9 403 aa17.67■□□□□ 0.42
CCDC88B-206ENST00000473405 SLC6A16Q9GZN6 736 aa17.67■□□□□ 0.42
CCDC88B-206ENST00000473405 AICDAQ9GZX7 198 aa17.67■□□□□ 0.42
CCDC88B-206ENST00000473405 PELI2Q9HAT8 420 aa17.67■□□□□ 0.42
CCDC88B-206ENST00000473405 KCNK13Q9HB14 408 aa17.67■□□□□ 0.42
CCDC88B-206ENST00000473405 PDZD2O15018 2839 aa17.67■□□□□ 0.42
CCDC88B-206ENST00000473405 PIAS1O75925 651 aa17.66■□□□□ 0.42
CCDC88B-206ENST00000473405 ST13P50502 369 aaKnown RBP17.66■□□□□ 0.42
CCDC88B-206ENST00000473405 CDKL1Q00532 357 aa17.66■□□□□ 0.42
CCDC88B-206ENST00000473405 RGS1Q08116 209 aa17.66■□□□□ 0.42
CCDC88B-206ENST00000473405 CBLBQ13191 982 aa17.66■□□□□ 0.42
CCDC88B-206ENST00000473405 TUBA3CQ13748 450 aa17.66■□□□□ 0.42
CCDC88B-206ENST00000473405 ZNF766Q5HY98 468 aa17.66■□□□□ 0.42
CCDC88B-206ENST00000473405 TUBA3EQ6PEY2 450 aa17.66■□□□□ 0.42
CCDC88B-206ENST00000473405 NXPE4Q6UWF7 544 aa17.66■□□□□ 0.42
CCDC88B-206ENST00000473405 GFRALQ6UXV0 394 aa17.66■□□□□ 0.42
CCDC88B-206ENST00000473405 ABHD13Q7L211 337 aa17.66■□□□□ 0.42
CCDC88B-206ENST00000473405 TMPRSS11BQ86T26 416 aa17.66■□□□□ 0.42
CCDC88B-206ENST00000473405 NKAPQ8N5F7 415 aaKnown RBP17.66■□□□□ 0.42
CCDC88B-206ENST00000473405 TBC1D19Q8N5T2 526 aa17.66■□□□□ 0.42
CCDC88B-206ENST00000473405 MDS2Q8NDY4 140 aa17.66■□□□□ 0.42
CCDC88B-206ENST00000473405 ZNF354BQ96LW1 612 aa17.66■□□□□ 0.42
CCDC88B-206ENST00000473405 SIGLEC12Q96PQ1 595 aa17.66■□□□□ 0.42
CCDC88B-206ENST00000473405 LPAR4Q99677 370 aa17.66■□□□□ 0.42
CCDC88B-206ENST00000473405 SLC22A14Q9Y267 594 aa17.66■□□□□ 0.42
CCDC88B-206ENST00000473405 DYRK1BQ9Y463 629 aa17.66■□□□□ 0.42
CCDC88B-206ENST00000473405 OARD1Q9Y530 152 aa17.66■□□□□ 0.42
CCDC88B-206ENST00000473405 PCNX1Q96RV3 2341 aa17.66■□□□□ 0.42
CCDC88B-206ENST00000473405 A0A1B0GUH1 482 aa17.65■□□□□ 0.42
CCDC88B-206ENST00000473405 EFCAB8A8MWE9 144 aa17.65■□□□□ 0.42
CCDC88B-206ENST00000473405 WISP2O76076 250 aa17.65■□□□□ 0.42
CCDC88B-206ENST00000473405 UNC5CO95185 931 aa17.65■□□□□ 0.42
CCDC88B-206ENST00000473405 WISP3O95389 354 aaPredicted RBP17.65■□□□□ 0.42
CCDC88B-206ENST00000473405 CRYABP02511 175 aaKnown RBP17.65■□□□□ 0.42
CCDC88B-206ENST00000473405 JAK1P23458 1154 aa17.65■□□□□ 0.42
CCDC88B-206ENST00000473405 SLC26A5P58743 744 aa17.65■□□□□ 0.42
CCDC88B-206ENST00000473405 SKP1P63208 163 aa17.65■□□□□ 0.42
CCDC88B-206ENST00000473405 TSNQ15631 228 aaKnown RBP17.65■□□□□ 0.42
CCDC88B-206ENST00000473405 NIPAL1Q6NVV3 410 aa17.65■□□□□ 0.42
CCDC88B-206ENST00000473405 ZBED8Q8IZ13 594 aa17.65■□□□□ 0.42
CCDC88B-206ENST00000473405 DNAJB8Q8NHS0 232 aa17.65■□□□□ 0.42
CCDC88B-206ENST00000473405 CREB3L4Q8TEY5 395 aa17.65■□□□□ 0.42
CCDC88B-206ENST00000473405 RELTQ969Z4 430 aa17.65■□□□□ 0.42
CCDC88B-206ENST00000473405 VPS39Q96JC1 886 aa17.65■□□□□ 0.42
CCDC88B-206ENST00000473405 HES7Q9BYE0 225 aa17.65■□□□□ 0.42
CCDC88B-206ENST00000473405 RHOJQ9H4E5 214 aa17.65■□□□□ 0.42
CCDC88B-206ENST00000473405 KLHL31Q9H511 634 aa17.65■□□□□ 0.42
CCDC88B-206ENST00000473405 SMYD2Q9NRG4 433 aa17.65■□□□□ 0.42
CCDC88B-206ENST00000473405 ANKRD10Q9NXR5 420 aa17.65■□□□□ 0.42
CCDC88B-206ENST00000473405 PYCARDQ9ULZ3 195 aa17.65■□□□□ 0.42
CCDC88B-206ENST00000473405 SNX24Q9Y343 169 aa17.65■□□□□ 0.42
CCDC88B-206ENST00000473405 PCDHGB6Q9Y5F9 930 aa17.65■□□□□ 0.42
CCDC88B-206ENST00000473405 CELSR1Q9NYQ6 3014 aa17.65■□□□□ 0.42
CCDC88B-206ENST00000473405 B4GALT2O60909 372 aa17.64■□□□□ 0.41
CCDC88B-206ENST00000473405 SMIM10L1P0DMW3 83 aa17.64■□□□□ 0.41
CCDC88B-206ENST00000473405 CD96P40200 585 aa17.64■□□□□ 0.41
CCDC88B-206ENST00000473405 HNF4AP41235 474 aa17.64■□□□□ 0.41
CCDC88B-206ENST00000473405 SLC6A12P48065 614 aa17.64■□□□□ 0.41
CCDC88B-206ENST00000473405 OR4D2P58180 307 aa17.64■□□□□ 0.41
CCDC88B-206ENST00000473405 RAB8AP61006 207 aa17.64■□□□□ 0.41
CCDC88B-206ENST00000473405 MRPS25P82663 173 aaKnown RBP17.64■□□□□ 0.41
CCDC88B-206ENST00000473405 MEP1AQ16819 746 aa17.64■□□□□ 0.41
CCDC88B-206ENST00000473405 C18orf21Q32NC0 220 aaPredicted RBP17.64■□□□□ 0.41
CCDC88B-206ENST00000473405 QSOX2Q6ZRP7 698 aa17.64■□□□□ 0.41
CCDC88B-206ENST00000473405 ADAMTSL2Q86TH1 951 aa17.64■□□□□ 0.41
CCDC88B-206ENST00000473405 KLHDC8AQ8IYD2 350 aa17.64■□□□□ 0.41
CCDC88B-206ENST00000473405 KIF2BQ8N4N8 673 aa17.64■□□□□ 0.41
CCDC88B-206ENST00000473405 ELP5Q8TE02 316 aa17.64■□□□□ 0.41
CCDC88B-206ENST00000473405 SMIM10Q96HG1 83 aa17.64■□□□□ 0.41
CCDC88B-206ENST00000473405 KRT12Q99456 494 aa17.64■□□□□ 0.41
CCDC88B-206ENST00000473405 AIF1LQ9BQI0 150 aa17.64■□□□□ 0.41
CCDC88B-206ENST00000473405 POPDC3Q9HBV1 291 aa17.64■□□□□ 0.41
CCDC88B-206ENST00000473405 KCNE2Q9Y6J6 123 aa17.64■□□□□ 0.41
CCDC88B-206ENST00000473405 IGKV3D-11A0A0A0MRZ8 115 aa17.63■□□□□ 0.41
CCDC88B-206ENST00000473405 MAOAP21397 527 aa17.63■□□□□ 0.41
CCDC88B-206ENST00000473405 GDF5P43026 501 aa17.63■□□□□ 0.41
CCDC88B-206ENST00000473405 PAFAH1B1P43034 410 aa17.63■□□□□ 0.41
CCDC88B-206ENST00000473405 HNMTP50135 292 aa17.63■□□□□ 0.41
CCDC88B-206ENST00000473405 BTG2P78543 158 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms