RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 SCAF4O95104 1147 aaKnown RBP12.91□□□□□ -0.34
COL6A3-209ENST00000472056 GOT2P00505 430 aaKnown RBP12.91□□□□□ -0.34
COL6A3-209ENST00000472056 ADORA2AP29274 412 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 ST3GAL4Q11206 333 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 SNTA1Q13424 505 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 TMED4Q7Z7H5 227 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 CADM2Q8N3J6 435 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 NAT16Q8N8M0 369 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 GJD4Q96KN9 370 aaPredicted RBP12.91□□□□□ -0.34
COL6A3-209ENST00000472056 PCDHB3Q9Y5E6 796 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 PRSS51A0A1B0GVH4 220 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 A0A1W2PRB8 838 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 TGFB1I1O43294 461 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 EEDO75530 441 aaKnown RBP12.91□□□□□ -0.34
COL6A3-209ENST00000472056 CHRNB2P17787 502 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 HTR1EP28566 365 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 OXTRP30559 389 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 NRG1Q02297 640 aaPredicted RBP12.91□□□□□ -0.34
COL6A3-209ENST00000472056 ZNF33BQ06732 778 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 ARL9Q6T311 187 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 ANKRD23Q86SG2 305 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 TMEM145Q8NBT3 493 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 CMASQ8NFW8 434 aaPredicted RBP12.91□□□□□ -0.34
COL6A3-209ENST00000472056 IL31RAQ8NI17 732 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 TWNKQ96RR1 684 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 MAP10Q9P2G4 905 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 FBXW11Q9UKB1 542 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 MPDZO75970 2070 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 LAMB1P07942 1786 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 MAOAP21397 527 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 FOXN2P32314 431 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 GMPRP36959 345 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 EARS2Q5JPH6 523 aaKnown RBP12.91□□□□□ -0.34
COL6A3-209ENST00000472056 CPA6Q8N4T0 437 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 UPF1Q92900 1129 aaKnown RBP eCLIP12.91□□□□□ -0.34
COL6A3-209ENST00000472056 KCNC2Q96PR1 638 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 RGPD1P0DJD0 1748 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 MYO5AQ9Y4I1 1855 aaKnown RBP12.91□□□□□ -0.34
COL6A3-209ENST00000472056 SPATA31C1P0DKV0 1188 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 CERS1P27544 350 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 CLIP3Q96DZ5 547 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 BCL9LQ86UU0 1499 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 SVILO95425 2214 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 A0A0G2JLW4 131 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 H0YGN5 161 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 EPHB6O15197 1021 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 C4BPAP04003 597 aaKnown RBP12.91□□□□□ -0.34
COL6A3-209ENST00000472056 TRIM23P36406 574 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 NCBP2P52298 156 aaKnown RBP eCLIP12.91□□□□□ -0.34
COL6A3-209ENST00000472056 OR12D2P58182 307 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 SCGB2A2Q13296 93 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 KCNJ11Q14654 390 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 CCBE1Q6UXH8 406 aaPredicted RBP12.91□□□□□ -0.34
COL6A3-209ENST00000472056 UNC5DQ6UXZ4 953 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 SPATA6LQ8N4H0 392 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 MINDY1Q8N5J2 469 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 ZNF382Q96SR6 550 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 BPIFA1Q9NP55 256 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 SMPD4Q9NXE4 827 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 CDC14AQ9UNH5 594 aa12.91□□□□□ -0.34
COL6A3-209ENST00000472056 S100A7P31151 101 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 ZDHHC14Q8IZN3 488 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 ALPK1Q96QP1 1244 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 PKP2Q99959 881 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 CORO1BQ9BR76 489 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 TMEM205Q6UW68 189 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 KIAA1191Q96A73 305 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 COQ4Q9Y3A0 265 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 SCN1AP35498 2009 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 HSD11B2P80365 405 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 OR52E4Q8NGH9 312 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 NINJ1Q92982 152 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 TTPALQ9BTX7 342 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 XPNPEP1Q9NQW7 623 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 FZD10Q9ULW2 581 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 SPATA31A1Q5TZJ5 1347 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 A0A096LPI6 279 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 MDFIC2A0A1B0GVS7 189 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 LATS1O95835 1130 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 EBLN1P0CF75 366 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 ATP6V1C2Q8NEY4 427 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 OR8J1Q8NGP2 316 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 ARL6Q9H0F7 186 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 MGAT4CQ9UBM8 478 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 NOCTQ9UK39 431 aaKnown RBP12.9□□□□□ -0.34
COL6A3-209ENST00000472056 BHMG1C9JSJ3 638 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-209ENST00000472056 VIPP01282 170 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 TUSC3Q13454 348 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 RAB31Q13636 194 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 RTL6Q6ICC9 239 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 CCDC71Q8IV32 467 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-209ENST00000472056 DNAJC22Q8N4W6 341 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 GNPDA2Q8TDQ7 276 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 ZBTB45Q96K62 511 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-209ENST00000472056 URM1Q9BTM9 101 aaKnown RBP12.9□□□□□ -0.34
COL6A3-209ENST00000472056 NIFKQ9BYG3 293 aaKnown RBP12.9□□□□□ -0.34
COL6A3-209ENST00000472056 IMP3Q9NV31 184 aaKnown RBP12.9□□□□□ -0.34
COL6A3-209ENST00000472056 A0A1W2PQ45 241 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-209ENST00000472056 A0A1W2PQY0 241 aa12.9□□□□□ -0.34
COL6A3-209ENST00000472056 SC5DO75845 299 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms