RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 SLC25A25Q6KCM7 469 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 TMEM182Q6ZP80 229 aaPredicted RBP4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 PAQR9Q6ZVX9 377 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 ECHDC2Q86YB7 292 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 CCDC60Q8IWA6 550 aaPredicted RBP4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 UEVLDQ8IX04 471 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 NELFCDQ8IXH7 590 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 TTLQ8NG68 377 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 OR9K2Q8NGE7 335 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 OR10S1Q8NGN2 331 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 MBD3L2Q8NHZ7 208 aaPredicted RBP4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 TEX47Q8TBZ9 253 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 GLYATL2Q8WU03 294 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 TRIB2Q92519 343 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 ST6GALNAC6Q969X2 333 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 CIDECQ96AQ7 238 aaPredicted RBP4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 LURAP1Q96LR2 239 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 PRRC1Q96M27 445 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 ZNF583Q96ND8 569 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 ZNF317Q96PQ6 595 aaPredicted RBP4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 BTBD9Q96Q07 612 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 PANX1Q96RD7 426 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 NUDT22Q9BRQ3 303 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 ALKBH7Q9BT30 221 aaPredicted RBP4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 KATNB1Q9BVA0 655 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 ATG10Q9H0Y0 220 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 LRMDAQ9H2I8 198 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 FZD8Q9H461 694 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 CUEDC2Q9H467 287 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 FBXO44Q9H4M3 255 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 MINDY3Q9H8M7 445 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 MED20Q9H944 212 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 C12orf10Q9HB07 376 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 PIH1D3Q9NQM4 214 aaKnown RBP4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 ZNF275Q9NSD4 429 aaPredicted RBP4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 SETD4Q9NVD3 440 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 TMEM161AQ9NX61 479 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 NCKIPSDQ9NZQ3 722 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 CRLS1Q9UJA2 301 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 SNX7Q9UNH6 387 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 MGAT4BQ9UQ53 548 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 CHMP2BQ9UQN3 213 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 ENTPD4Q9Y227 616 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 RUVBL2Q9Y230 463 aaKnown RBP4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 TRAV25A0A0B4J276 109 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 FAM240BA0A1B0GVZ2 78 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 ARHGEF35A5YM69 484 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 GOLGA8KD6RF30 607 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 HAS3O00219 553 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 TLX3O43711 291 aaPredicted RBP4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 NDUFS6O75380 124 aaKnown RBP4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 DFFBO76075 338 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 SEMA3DO95025 777 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 CCNB2O95067 398 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 AHSA1O95433 338 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 BCL10O95999 233 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 HMBSP08397 361 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 PLA2G2AP14555 144 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 DARSP14868 501 aaKnown RBP4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 NAGAP17050 411 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 NT5EP21589 574 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 DRD1P21728 446 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 SLC1A3P43003 542 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 RPS5P46782 204 aaKnown RBP4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 SLC6A12P48065 614 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 FHITP49789 147 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 SUOXP51687 545 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 P2RX3P56373 397 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 FAM3BP58499 235 aaPredicted RBP4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 ZXDBP98169 803 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 BNC1Q01954 994 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 RBPJQ06330 500 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 ENPEPQ07075 957 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 CXCL9Q07325 125 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 ACSM1Q08AH1 577 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 DMP1Q13316 513 aaPredicted RBP4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 GAB1Q13480 694 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 ART3Q13508 389 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 BFSP2Q13515 415 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 FHL3Q13643 280 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 RUNX2Q13950 521 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 DGCR6Q14129 220 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 SCRIBQ14160 1630 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 PTGR1Q14914 329 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 FRMPD4Q14CM0 1322 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 INPP5JQ15735 1006 aaPredicted RBP4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 MAPK11Q15759 364 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 SNAPC1Q16533 368 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 PCK2Q16822 640 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 CDO1Q16878 200 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 ZSCAN23Q3MJ62 389 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 MOGAT2Q3SYC2 334 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 AASDHQ4L235 1098 aaPredicted RBP4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 DNAL1Q4LDG9 190 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 CBWD6Q4V339 395 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 CBWD3Q5JTY5 395 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 BEND6Q5SZJ8 279 aaPredicted RBP4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 MSANTD2Q6P1R3 559 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 DLEU7Q6UYE1 221 aa4.59□□□□□ -1.67
CCDC88A-210ENST00000468534 NDUFAF7Q7L592 441 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms