RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 PRAMEF13Q5VWM6 474 aa14.46□□□□□ -0.1
LDLR-202ENST00000455727 TMIGD1Q6UXZ0 262 aa14.46□□□□□ -0.1
LDLR-202ENST00000455727 FAM83HQ6ZRV2 1179 aaPredicted RBP14.46□□□□□ -0.1
LDLR-202ENST00000455727 AMZ2Q86W34 360 aa14.46□□□□□ -0.1
LDLR-202ENST00000455727 FAM129CQ86XR2 697 aa14.46□□□□□ -0.1
LDLR-202ENST00000455727 MMAAQ8IVH4 418 aaKnown RBP14.46□□□□□ -0.1
LDLR-202ENST00000455727 ZNF784Q8NCA9 323 aaPredicted RBP14.46□□□□□ -0.1
LDLR-202ENST00000455727 OR52N2Q8NGI0 321 aa14.46□□□□□ -0.1
LDLR-202ENST00000455727 PPCDCQ96CD2 204 aa14.46□□□□□ -0.1
LDLR-202ENST00000455727 OR51B5Q9H339 312 aa14.46□□□□□ -0.1
LDLR-202ENST00000455727 TMEM38AQ9H6F2 299 aa14.46□□□□□ -0.1
LDLR-202ENST00000455727 GPN2Q9H9Y4 310 aaPredicted RBP14.46□□□□□ -0.1
LDLR-202ENST00000455727 TRPV4Q9HBA0 871 aa14.46□□□□□ -0.1
LDLR-202ENST00000455727 GPATCH2Q9NW75 528 aa14.46□□□□□ -0.1
LDLR-202ENST00000455727 ASF1AQ9Y294 204 aa14.46□□□□□ -0.1
LDLR-202ENST00000455727 PCDHGB3Q9Y5G1 929 aa14.46□□□□□ -0.1
LDLR-202ENST00000455727 HEMK1Q9Y5R4 338 aaPredicted RBP14.46□□□□□ -0.1
LDLR-202ENST00000455727 SNX5Q9Y5X3 404 aa14.46□□□□□ -0.1
LDLR-202ENST00000455727 DNMT3AQ9Y6K1 912 aaPredicted RBP14.46□□□□□ -0.1
LDLR-202ENST00000455727 ALPK3Q96L96 1907 aa14.45□□□□□ -0.1
LDLR-202ENST00000455727 TMEM229AB2RXF0 380 aa14.45□□□□□ -0.1
LDLR-202ENST00000455727 GCM2O75603 506 aaPredicted RBP14.45□□□□□ -0.1
LDLR-202ENST00000455727 NTRK1P04629 796 aa14.45□□□□□ -0.1
LDLR-202ENST00000455727 ERGP11308 486 aa14.45□□□□□ -0.1
LDLR-202ENST00000455727 CCNA2P20248 432 aa14.45□□□□□ -0.1
LDLR-202ENST00000455727 CLK3P49761 638 aaKnown RBP14.45□□□□□ -0.1
LDLR-202ENST00000455727 IL5RAQ01344 420 aa14.45□□□□□ -0.1
LDLR-202ENST00000455727 FADDQ13158 208 aa14.45□□□□□ -0.1
LDLR-202ENST00000455727 PNCKQ6P2M8 343 aa14.45□□□□□ -0.1
LDLR-202ENST00000455727 GALNT5Q7Z7M9 940 aa14.45□□□□□ -0.1
LDLR-202ENST00000455727 TSPYL5Q86VY4 417 aaPredicted RBP14.45□□□□□ -0.1
LDLR-202ENST00000455727 CROCCP3Q8IVE0 287 aa14.45□□□□□ -0.1
LDLR-202ENST00000455727 DCUN1D3Q8IWE4 304 aa14.45□□□□□ -0.1
LDLR-202ENST00000455727 KRT78Q8N1N4 520 aa14.45□□□□□ -0.1
LDLR-202ENST00000455727 OR4K1Q8NGD4 311 aa14.45□□□□□ -0.1
LDLR-202ENST00000455727 WDR48Q8TAF3 677 aa14.45□□□□□ -0.1
LDLR-202ENST00000455727 SGCDQ92629 289 aa14.45□□□□□ -0.1
LDLR-202ENST00000455727 FGF13Q92913 245 aa14.45□□□□□ -0.1
LDLR-202ENST00000455727 MUL1Q969V5 352 aa14.45□□□□□ -0.1
LDLR-202ENST00000455727 TPD52L3Q96J77 140 aa14.45□□□□□ -0.1
LDLR-202ENST00000455727 APOL4Q9BPW4 351 aa14.45□□□□□ -0.1
LDLR-202ENST00000455727 DCUN1D5Q9BTE7 237 aa14.45□□□□□ -0.1
LDLR-202ENST00000455727 TMEM106CQ9BVX2 250 aa14.45□□□□□ -0.1
LDLR-202ENST00000455727 NAA50Q9GZZ1 169 aaKnown RBP14.45□□□□□ -0.1
LDLR-202ENST00000455727 SPNS1Q9H2V7 528 aa14.45□□□□□ -0.1
LDLR-202ENST00000455727 PRSS16Q9NQE7 514 aa14.45□□□□□ -0.1
LDLR-202ENST00000455727 NDRG4Q9ULP0 352 aaKnown RBP14.45□□□□□ -0.1
LDLR-202ENST00000455727 E9PQ18 207 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 DIRAS1O95057 198 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 HSD17B2P37059 387 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 FGD3Q5JSP0 725 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 FAM46CQ5VWP2 391 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 CCDC80Q76M96 950 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 ADGRD2Q7Z7M1 963 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 SFTPA1Q8IWL2 248 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 TTC29Q8NA56 475 aaPredicted RBP14.44□□□□□ -0.1
LDLR-202ENST00000455727 MAL2Q969L2 176 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 THAP11Q96EK4 314 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 SLC35A5Q9BS91 424 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 MTIF3Q9H2K0 278 aaKnown RBP14.44□□□□□ -0.1
LDLR-202ENST00000455727 RHBGQ9H310 441 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 RAD21L1Q9H4I0 556 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 RIBC2Q9H4K1 309 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 THUMPD1Q9NXG2 353 aaKnown RBP14.44□□□□□ -0.1
LDLR-202ENST00000455727 THAP10Q9P2Z0 257 aaPredicted RBP14.44□□□□□ -0.1
LDLR-202ENST00000455727 WBP11Q9Y2W2 641 aaKnown RBP14.44□□□□□ -0.1
LDLR-202ENST00000455727 A0A1W2PPW3 197 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 TBC1D3BA6NDS4 549 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 ANGPTL1O95841 491 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 C6orf47O95873 294 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 RPN2P04844 631 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 PCMT1P22061 227 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 FSHRP23945 695 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 IL12RB1P42701 662 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 CRATP43155 626 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 PLA2G16P53816 162 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 TAS2R50P59544 299 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 CNTN1Q12860 1018 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 CAMK2GQ13555 558 aaPredicted RBP14.44□□□□□ -0.1
LDLR-202ENST00000455727 LAPTM4AQ15012 233 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 CYP2A13Q16696 494 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 MPEG1Q2M385 716 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 TRIM40Q6P9F5 258 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 VN1R5Q7Z5H4 357 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 ZC3H7AQ8IWR0 971 aaKnown RBP14.44□□□□□ -0.1
LDLR-202ENST00000455727 OXR1Q8N573 874 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 LMNTD1Q8N9Z9 388 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 PLA2G15Q8NCC3 412 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 BPIFB6Q8NFQ5 453 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 TFGQ92734 400 aaPredicted RBP14.44□□□□□ -0.1
LDLR-202ENST00000455727 DUSP21Q9H596 190 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 PLGRKTQ9HBL7 147 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 C1GALT1Q9NS00 363 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 KRT84Q9NSB2 600 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 PAK1IP1Q9NWT1 392 aaPredicted RBP14.44□□□□□ -0.1
LDLR-202ENST00000455727 TAS2R9Q9NYW1 312 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 GDE1Q9NZC3 331 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 AHSPQ9NZD4 102 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 ICKQ9UPZ9 632 aa14.44□□□□□ -0.1
LDLR-202ENST00000455727 TMEM98Q9Y2Y6 226 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms