RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 KLHL2O95198 593 aa14.36□□□□□ -0.11
LIMS3-201ENST00000437679 ALDOAP04075 364 aaKnown RBP14.36□□□□□ -0.11
LIMS3-201ENST00000437679 C8orf89P0DMQ9 161 aa14.36□□□□□ -0.11
LIMS3-201ENST00000437679 COX6A1P12074 109 aa14.36□□□□□ -0.11
LIMS3-201ENST00000437679 CNTFP26441 200 aa14.36□□□□□ -0.11
LIMS3-201ENST00000437679 GLRBP48167 497 aa14.36□□□□□ -0.11
LIMS3-201ENST00000437679 CSRP3P50461 194 aa14.36□□□□□ -0.11
LIMS3-201ENST00000437679 STXBP1P61764 594 aaKnown RBP14.36□□□□□ -0.11
LIMS3-201ENST00000437679 LAPTM5Q13571 262 aa14.36□□□□□ -0.11
LIMS3-201ENST00000437679 NADK2Q4G0N4 442 aa14.36□□□□□ -0.11
LIMS3-201ENST00000437679 PAGE2BQ5JRK9 111 aa14.36□□□□□ -0.11
LIMS3-201ENST00000437679 TOR1AIP1Q5JTV8 583 aa14.36□□□□□ -0.11
LIMS3-201ENST00000437679 TRMT10CQ7L0Y3 403 aaKnown RBP14.36□□□□□ -0.11
LIMS3-201ENST00000437679 KBTBD2Q8IY47 623 aa14.36□□□□□ -0.11
LIMS3-201ENST00000437679 UTP15Q8TED0 518 aaKnown RBP14.36□□□□□ -0.11
LIMS3-201ENST00000437679 CREB3L4Q8TEY5 395 aa14.36□□□□□ -0.11
LIMS3-201ENST00000437679 UBTD2Q8WUN7 234 aa14.36□□□□□ -0.11
LIMS3-201ENST00000437679 CCT6BQ92526 530 aa14.36□□□□□ -0.11
LIMS3-201ENST00000437679 PTCD3Q96EY7 689 aaKnown RBP14.36□□□□□ -0.11
LIMS3-201ENST00000437679 PEX11GQ96HA9 241 aa14.36□□□□□ -0.11
LIMS3-201ENST00000437679 THOC3Q96J01 351 aaKnown RBP14.36□□□□□ -0.11
LIMS3-201ENST00000437679 SEC16BQ96JE7 1060 aa14.36□□□□□ -0.11
LIMS3-201ENST00000437679 MESP1Q9BRJ9 268 aa14.36□□□□□ -0.11
LIMS3-201ENST00000437679 VN1R1Q9GZP7 353 aa14.36□□□□□ -0.11
LIMS3-201ENST00000437679 LHPPQ9H008 270 aa14.36□□□□□ -0.11
LIMS3-201ENST00000437679 RIC8BQ9NVN3 520 aa14.36□□□□□ -0.11
LIMS3-201ENST00000437679 OPTCQ9UBM4 332 aa14.36□□□□□ -0.11
LIMS3-201ENST00000437679 C19orf25Q9UFG5 118 aaPredicted RBP14.36□□□□□ -0.11
LIMS3-201ENST00000437679 ZNF180Q9UJW8 692 aa14.36□□□□□ -0.11
LIMS3-201ENST00000437679 RP1L1Q8IWN7 2480 aaPredicted RBP14.36□□□□□ -0.11
LIMS3-201ENST00000437679 LOC102723996A0A087X1L8 192 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 IGHV1-45A0A0A0MS14 117 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 EXOC1LA0A1B0GW35 172 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 A0A1W2PQ72 361 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 TTLL8A6PVC2 850 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 K7EPI3 171 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 WISP1O95388 367 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 ABHD2P08910 425 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 GFAPP14136 432 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 HPDP32754 393 aaPredicted RBP14.35□□□□□ -0.11
LIMS3-201ENST00000437679 AGTR2P50052 363 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 RAB8AP61006 207 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 IRF8Q02556 426 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 DOC2AQ14183 400 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 HIST2H2ACQ16777 129 aaPredicted RBP14.35□□□□□ -0.11
LIMS3-201ENST00000437679 LGSNQ5TDP6 509 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 AGAP7PQ5VUJ5 663 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 HIST2H2AA3Q6FI13 130 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 TMEM205Q6UW68 189 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 ZADH2Q8N4Q0 377 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 RBMXL3Q8N7X1 1067 aaKnown RBP14.35□□□□□ -0.11
LIMS3-201ENST00000437679 OR5T3Q8NGG3 340 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 WDR34Q96EX3 536 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 AGAP4Q96P64 663 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 OR1F2PQ96R84 312 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 EFCAB11Q9BUY7 163 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 MFRPQ9BY79 579 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 KLHL31Q9H511 634 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 CLK4Q9HAZ1 481 aaKnown RBP14.35□□□□□ -0.11
LIMS3-201ENST00000437679 PRM3Q9NNZ6 103 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 COPG2Q9UBF2 871 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 ANGPTL3Q9Y5C1 460 aa14.35□□□□□ -0.11
LIMS3-201ENST00000437679 MYO18BQ8IUG5 2567 aa14.34□□□□□ -0.11
LIMS3-201ENST00000437679 SCN2AQ99250 2005 aa14.34□□□□□ -0.11
LIMS3-201ENST00000437679 CHST10O43529 356 aa14.34□□□□□ -0.11
LIMS3-201ENST00000437679 CLEC3AO75596 197 aa14.34□□□□□ -0.11
LIMS3-201ENST00000437679 B3GALT4O96024 378 aa14.34□□□□□ -0.11
LIMS3-201ENST00000437679 JAK1P23458 1154 aa14.34□□□□□ -0.11
LIMS3-201ENST00000437679 AP2B1P63010 937 aa14.34□□□□□ -0.11
LIMS3-201ENST00000437679 OLR1P78380 273 aa14.34□□□□□ -0.11
LIMS3-201ENST00000437679 KCNC4Q03721 635 aa14.34□□□□□ -0.11
LIMS3-201ENST00000437679 Q0VFX4 171 aa14.34□□□□□ -0.11
LIMS3-201ENST00000437679 HYAL2Q12891 473 aa14.34□□□□□ -0.11
LIMS3-201ENST00000437679 CHIT1Q13231 466 aa14.34□□□□□ -0.11
LIMS3-201ENST00000437679 TBCCQ15814 346 aa14.34□□□□□ -0.11
LIMS3-201ENST00000437679 PFKFB4Q16877 469 aa14.34□□□□□ -0.11
LIMS3-201ENST00000437679 JMJD6Q6NYC1 403 aaPredicted RBP14.34□□□□□ -0.11
LIMS3-201ENST00000437679 IGFL3Q6UXB1 125 aa14.34□□□□□ -0.11
LIMS3-201ENST00000437679 DCAKDQ8WVC6 231 aa14.34□□□□□ -0.11
LIMS3-201ENST00000437679 UBE2E3Q969T4 207 aa14.34□□□□□ -0.11
LIMS3-201ENST00000437679 GAL3ST3Q96A11 431 aa14.34□□□□□ -0.11
LIMS3-201ENST00000437679 ISL2Q96A47 359 aa14.34□□□□□ -0.11
LIMS3-201ENST00000437679 PNPLA2Q96AD5 504 aa14.34□□□□□ -0.11
LIMS3-201ENST00000437679 TBC1D20Q96BZ9 403 aa14.34□□□□□ -0.11
LIMS3-201ENST00000437679 FAR2Q96K12 515 aa14.34□□□□□ -0.11
LIMS3-201ENST00000437679 RBCK1Q9BYM8 510 aa14.34□□□□□ -0.11
LIMS3-201ENST00000437679 ZNF700Q9H0M5 742 aa14.34□□□□□ -0.11
LIMS3-201ENST00000437679 SLAMF7Q9NQ25 335 aa14.34□□□□□ -0.11
LIMS3-201ENST00000437679 ASB1Q9Y576 335 aa14.34□□□□□ -0.11
LIMS3-201ENST00000437679 A0A088AWK7 358 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 LRIT2A6NDA9 550 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 TRIM49D1C9J1S8 452 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 PSMD12O00232 456 aaPredicted RBP14.33□□□□□ -0.12
LIMS3-201ENST00000437679 RIPK2O43353 540 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 PRAMEF4O60810 478 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 CDC123O75794 336 aaPredicted RBP14.33□□□□□ -0.12
LIMS3-201ENST00000437679 SERPINA7P05543 415 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 UQCRHP07919 91 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 FHP07954 510 aa14.33□□□□□ -0.12
LIMS3-201ENST00000437679 SNRPAP09012 282 aaKnown RBP14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms