RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 HIST2H2AA3Q6FI13 130 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 MED27Q6P2C8 311 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 SHISA6Q6ZSJ9 500 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 OVCH1Q7RTY7 1134 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 SHISA5Q8N114 240 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 BANPQ8N9N5 519 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 CCDC63Q8NA47 563 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 ATP6V1E2Q96A05 226 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 SPSB2Q99619 263 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 C1QTNF3Q9BXJ4 246 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 ERVK-6Q9BXR3 956 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 IQCGQ9H095 443 aaKnown RBP11.84□□□□□ -0.51
SKA1-203ENST00000417656 CENPHQ9H3R5 247 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 KLHL31Q9H511 634 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 SOX17Q9H6I2 414 aaPredicted RBP11.84□□□□□ -0.51
SKA1-203ENST00000417656 ANKHQ9HCJ1 492 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 HCN3Q9P1Z3 774 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 TRPC4Q9UBN4 977 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 GRID1Q9ULK0 1009 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 CDC14AQ9UNH5 594 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 RNF11Q9Y3C5 154 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 NAALAD2Q9Y3Q0 740 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 SLC22A7Q9Y694 548 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 SCN3AQ9NY46 2000 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 CCDC88CQ9P219 2028 aa11.84□□□□□ -0.51
SKA1-203ENST00000417656 A0A1B0GTL3 188 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 ANKDD1BA6NHY2 528 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 UGDHO60701 494 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 CLEC3AO75596 197 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 SUPT7LO94864 414 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 TBX6O95947 436 aaPredicted RBP11.83□□□□□ -0.52
SKA1-203ENST00000417656 UMODP07911 640 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 SERPINA6P08185 405 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 ALOX12P18054 663 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 PRKAA2P54646 552 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 RAB8AP61006 207 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 OLR1P78380 273 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 HERC3Q15034 1050 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 NKG7Q16617 165 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 UGT8Q16880 541 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 DEFB134Q4QY38 66 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 UNC50Q53HI1 259 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 LIPJQ5W064 366 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 LRIG3Q6UXM1 1119 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 ABHD13Q7L211 337 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 SLC22A9Q8IVM8 553 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 LAS2Q8IYD9 372 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 PRSS58Q8IYP2 241 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 RNF175Q8N4F7 328 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 AFAP1L2Q8N4X5 818 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 ARMC2Q8NEN0 867 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 MYRIPQ8NFW9 859 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 OR7G3Q8NG95 312 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 OR2Y1Q8NGV0 311 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 RDH11Q8TC12 318 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 UTP15Q8TED0 518 aaKnown RBP11.83□□□□□ -0.52
SKA1-203ENST00000417656 PPP4R1Q8TF05 950 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 ZNF473Q8WTR7 871 aaKnown RBP11.83□□□□□ -0.52
SKA1-203ENST00000417656 UBE2E3Q969T4 207 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 GAL3ST3Q96A11 431 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 L3HYPDHQ96EM0 354 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 SEC16BQ96JE7 1060 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 SMC6Q96SB8 1091 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 YIPF2Q9BWQ6 316 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 MS4A8Q9BY19 250 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 FAM117AQ9C073 453 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 SLC26A1Q9H2B4 701 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 RHBGQ9H310 441 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 WDR54Q9H977 334 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 SLC17A7Q9P2U7 560 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 ZNF282Q9UDV7 671 aaPredicted RBP11.83□□□□□ -0.52
SKA1-203ENST00000417656 SEC16AO15027 2179 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 LAMA5O15230 3695 aa11.83□□□□□ -0.52
SKA1-203ENST00000417656 CACNA1BQ00975 2339 aa11.82□□□□□ -0.52
SKA1-203ENST00000417656 A0A0G2JN53 185 aa11.82□□□□□ -0.52
SKA1-203ENST00000417656 VSTM2BA6NLU5 285 aa11.82□□□□□ -0.52
SKA1-203ENST00000417656 H0YIG0 161 aa11.82□□□□□ -0.52
SKA1-203ENST00000417656 PPP6CO00743 305 aa11.82□□□□□ -0.52
SKA1-203ENST00000417656 ERI3O43414 337 aaKnown RBP11.82□□□□□ -0.52
SKA1-203ENST00000417656 GALR3O60755 368 aaPredicted RBP11.82□□□□□ -0.52
SKA1-203ENST00000417656 SH3BGRLO75368 114 aa11.82□□□□□ -0.52
SKA1-203ENST00000417656 CLDN9O95484 217 aa11.82□□□□□ -0.52
SKA1-203ENST00000417656 OTCP00480 354 aa11.82□□□□□ -0.52
SKA1-203ENST00000417656 ALBP02768 609 aa11.82□□□□□ -0.52
SKA1-203ENST00000417656 CPA3P15088 417 aa11.82□□□□□ -0.52
SKA1-203ENST00000417656 OTX2P32243 289 aa11.82□□□□□ -0.52
SKA1-203ENST00000417656 STXBP1P61764 594 aaKnown RBP11.82□□□□□ -0.52
SKA1-203ENST00000417656 OCA2Q04671 838 aa11.82□□□□□ -0.52
SKA1-203ENST00000417656 CLCQ05315 142 aa11.82□□□□□ -0.52
SKA1-203ENST00000417656 PCLAFQ15004 111 aa11.82□□□□□ -0.52
SKA1-203ENST00000417656 ZRSR2Q15696 482 aaKnown RBP11.82□□□□□ -0.52
SKA1-203ENST00000417656 CPSF6Q16630 551 aaKnown RBP eCLIP11.82□□□□□ -0.52
SKA1-203ENST00000417656 CRTC2Q53ET0 693 aaPredicted RBP11.82□□□□□ -0.52
SKA1-203ENST00000417656 VWA2Q5GFL6 755 aa11.82□□□□□ -0.52
SKA1-203ENST00000417656 LETMD1Q6P1Q0 360 aa11.82□□□□□ -0.52
SKA1-203ENST00000417656 ZC3H7AQ8IWR0 971 aaKnown RBP11.82□□□□□ -0.52
SKA1-203ENST00000417656 CCNYL1Q8N7R7 359 aa11.82□□□□□ -0.52
SKA1-203ENST00000417656 L3MBTL4Q8NA19 623 aa11.82□□□□□ -0.52
SKA1-203ENST00000417656 OR4F6Q8NGB9 312 aa11.82□□□□□ -0.52
SKA1-203ENST00000417656 OR5T3Q8NGG3 340 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms