RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 PYCR2Q96C36 320 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 AP2M1Q96CW1 435 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 CXorf40BQ96DE9 158 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 SIPA1Q96FS4 1042 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 TOE1Q96GM8 510 aaKnown RBP14.25□□□□□ -0.13
USP4-203ENST00000415188 PYURFQ96I23 114 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 TBCDQ9BTW9 1192 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 NPLQ9BXD5 320 aaPredicted RBP14.25□□□□□ -0.13
USP4-203ENST00000415188 GABARAPL1Q9H0R8 117 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 CAPN10Q9HC96 672 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 ITM2CQ9NQX7 267 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 TMEM9Q9P0T7 183 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 USP36Q9P275 1121 aaKnown RBP14.25□□□□□ -0.13
USP4-203ENST00000415188 RPS6KA6Q9UK32 745 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 SLC6A14Q9UN76 642 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 CORO2BQ9UQ03 480 aa14.25□□□□□ -0.13
USP4-203ENST00000415188 TSPAN6O43657 245 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 MTX2O75431 263 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 SEC24DO94855 1032 aaPredicted RBP14.24□□□□□ -0.13
USP4-203ENST00000415188 SERPINA1P01009 418 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 TPMTP51580 245 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 RAD23AP54725 363 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 NUP107P57740 925 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 GABARAPL2P60520 117 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 ACSM2AQ08AH3 577 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 DOC2AQ14183 400 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 FNDC3BQ53EP0 1204 aaKnown RBP14.24□□□□□ -0.13
USP4-203ENST00000415188 SPIN4Q56A73 249 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 EEF1AKMT2Q5JPI9 291 aaKnown RBP14.24□□□□□ -0.13
USP4-203ENST00000415188 ANXA8L1Q5VT79 327 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 ACSM2BQ68CK6 577 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 NLRP8Q86W28 1048 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 OFCC1Q8IZS5 231 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 FAM86B1Q8N7N1 296 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 CEP76Q8TAP6 659 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 TMIGD2Q96BF3 282 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 DTD2Q96FN9 168 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 COQ10AQ96MF6 247 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 INPP5KQ9BT40 448 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 GPR174Q9BXC1 333 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 ATG10Q9H0Y0 220 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 ING2Q9H160 280 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 SLC6A13Q9NSD5 602 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 SIRT5Q9NXA8 310 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 WSB2Q9NYS7 404 aaPredicted RBP14.24□□□□□ -0.13
USP4-203ENST00000415188 BTNL2Q9UIR0 455 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 C3orf18Q9UK00 162 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 BLOC1S6Q9UL45 172 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 ORC6Q9Y5N6 252 aa14.24□□□□□ -0.13
USP4-203ENST00000415188 ADAMTS9Q9P2N4 1935 aa14.23□□□□□ -0.13
USP4-203ENST00000415188 OR2AG2A6NM03 316 aa14.23□□□□□ -0.13
USP4-203ENST00000415188 FPGTO14772 594 aa14.23□□□□□ -0.13
USP4-203ENST00000415188 CPNE6O95741 557 aa14.23□□□□□ -0.13
USP4-203ENST00000415188 PCNAP12004 261 aa14.23□□□□□ -0.13
USP4-203ENST00000415188 GPX2P18283 190 aa14.23□□□□□ -0.13
USP4-203ENST00000415188 CSRP1P21291 193 aaKnown RBP14.23□□□□□ -0.13
USP4-203ENST00000415188 HPCAL1P37235 193 aa14.23□□□□□ -0.13
USP4-203ENST00000415188 ELP6Q0PNE2 266 aa14.23□□□□□ -0.13
USP4-203ENST00000415188 TMEM115Q12893 351 aaPredicted RBP14.23□□□□□ -0.13
USP4-203ENST00000415188 NAE1Q13564 534 aa14.23□□□□□ -0.13
USP4-203ENST00000415188 ACOX1Q15067 660 aa14.23□□□□□ -0.13
USP4-203ENST00000415188 UGT8Q16880 541 aa14.23□□□□□ -0.13
USP4-203ENST00000415188 BROXQ5VW32 411 aa14.23□□□□□ -0.13
USP4-203ENST00000415188 OR4F3Q6IEY1 312 aa14.23□□□□□ -0.13
USP4-203ENST00000415188 DHRS4L2Q6PKH6 230 aa14.23□□□□□ -0.13
USP4-203ENST00000415188 PHACTR4Q8IZ21 702 aa14.23□□□□□ -0.13
USP4-203ENST00000415188 TMIEQ8NEW7 156 aa14.23□□□□□ -0.13
USP4-203ENST00000415188 WDR34Q96EX3 536 aa14.23□□□□□ -0.13
USP4-203ENST00000415188 C11orf24Q96F05 449 aaPredicted RBP14.23□□□□□ -0.13
USP4-203ENST00000415188 MAGED4Q96JG8 741 aa14.23□□□□□ -0.13
USP4-203ENST00000415188 ZNF514Q96K75 400 aaPredicted RBP14.23□□□□□ -0.13
USP4-203ENST00000415188 PHF12Q96QT6 1004 aa14.23□□□□□ -0.13
USP4-203ENST00000415188 DOK1Q99704 481 aa14.23□□□□□ -0.13
USP4-203ENST00000415188 REXO4Q9GZR2 422 aaKnown RBP14.23□□□□□ -0.13
USP4-203ENST00000415188 TMEM245Q9H330 911 aa14.23□□□□□ -0.13
USP4-203ENST00000415188 TOR3AQ9H497 397 aa14.23□□□□□ -0.13
USP4-203ENST00000415188 FAM118AQ9NWS6 357 aa14.23□□□□□ -0.13
USP4-203ENST00000415188 CKAP5Q14008 2032 aa14.23□□□□□ -0.13
USP4-203ENST00000415188 PCDH15Q96QU1 1955 aa14.22□□□□□ -0.13
USP4-203ENST00000415188 MAP1BP46821 2468 aaKnown RBP14.22□□□□□ -0.13
USP4-203ENST00000415188 SCAMP2O15127 329 aaKnown RBP14.22□□□□□ -0.13
USP4-203ENST00000415188 SCN2BO60939 215 aa14.22□□□□□ -0.13
USP4-203ENST00000415188 ITGAMP11215 1152 aa14.22□□□□□ -0.13
USP4-203ENST00000415188 COX7A2P14406 83 aa14.22□□□□□ -0.13
USP4-203ENST00000415188 CD22P20273 847 aa14.22□□□□□ -0.13
USP4-203ENST00000415188 DCKP27707 260 aa14.22□□□□□ -0.13
USP4-203ENST00000415188 DCTP40126 519 aa14.22□□□□□ -0.13
USP4-203ENST00000415188 CTSCP53634 463 aa14.22□□□□□ -0.13
USP4-203ENST00000415188 WNT3P56703 355 aa14.22□□□□□ -0.13
USP4-203ENST00000415188 VAC14Q08AM6 782 aa14.22□□□□□ -0.13
USP4-203ENST00000415188 FOXC1Q12948 553 aa14.22□□□□□ -0.13
USP4-203ENST00000415188 CAMK2GQ13555 558 aaPredicted RBP14.22□□□□□ -0.13
USP4-203ENST00000415188 TUBA3CQ13748 450 aa14.22□□□□□ -0.13
USP4-203ENST00000415188 VMACQ2NL98 169 aa14.22□□□□□ -0.13
USP4-203ENST00000415188 ZNF658BQ4V348 819 aaPredicted RBP14.22□□□□□ -0.13
USP4-203ENST00000415188 SHQ1Q6PI26 577 aaKnown RBP14.22□□□□□ -0.13
USP4-203ENST00000415188 DOK6Q6PKX4 331 aa14.22□□□□□ -0.13
USP4-203ENST00000415188 PARS2Q7L3T8 475 aaKnown RBP14.22□□□□□ -0.13
USP4-203ENST00000415188 GPR155Q7Z3F1 870 aa14.22□□□□□ -0.13
USP4-203ENST00000415188 FAM124AQ86V42 546 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms