RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 KELP23276 732 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 KDELR1P24390 212 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 EPHA8P29322 1005 aaPredicted RBP6.19□□□□□ -1.42
USP40-202ENST00000409945 GARSP41250 739 aaKnown RBP6.19□□□□□ -1.42
USP40-202ENST00000409945 NR2C2P49116 596 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 METAP1P53582 386 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 HADHBP55084 474 aaKnown RBP6.19□□□□□ -1.42
USP40-202ENST00000409945 KIF5AQ12840 1032 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 TUBB2AQ13885 445 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 PAFAH1B3Q15102 231 aaKnown RBP6.19□□□□□ -1.42
USP40-202ENST00000409945 TBCEQ15813 527 aaPredicted RBP6.19□□□□□ -1.42
USP40-202ENST00000409945 ZNF284Q2VY69 593 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 ZNF766Q5HY98 468 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 ARMC12Q5T9G4 340 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 CYP4V2Q6ZWL3 525 aaPredicted RBP6.19□□□□□ -1.42
USP40-202ENST00000409945 ARHGAP12Q8IWW6 846 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 BOLLQ8N9W6 283 aaKnown RBP6.19□□□□□ -1.42
USP40-202ENST00000409945 ADPRHL1Q8NDY3 354 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 KLK6Q92876 244 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 RNF157Q96PX1 679 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 NUDCD1Q96RS6 583 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 TUBB2BQ9BVA1 445 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 SCNM1Q9BWG6 230 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 NCKIPSDQ9NZQ3 722 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 LHX3Q9UBR4 397 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 HEY1Q9Y5J3 304 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 LAMA1P25391 3075 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 CNOT1A5YKK6 2376 aaKnown RBP6.19□□□□□ -1.42
USP40-202ENST00000409945 IGLON5A6NGN9 336 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 INSIG1O15503 277 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 KIF5CO60282 957 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 USP12O75317 370 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 PIGNO95427 931 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 LCA5LO95447 670 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 CD59P13987 128 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 CTNNA2P26232 953 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 CASQ1P31415 396 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 DUSP3P51452 185 aaPredicted RBP6.19□□□□□ -1.42
USP40-202ENST00000409945 INHBCP55103 352 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 TAS2R38P59533 333 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 GNG11P61952 73 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 SLC10A7Q0GE19 358 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 AP1B1Q10567 949 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 TMEM52BQ4KMG9 183 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 CEP78Q5JTW2 689 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 C1QTNF12Q5T7M4 302 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 C11orf63Q6NUN7 778 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 PIP4P1Q86T03 277 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 TRIM74Q86UV6 250 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 TRIM73Q86UV7 250 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 PARGQ86W56 976 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 CAMK1DQ8IU85 385 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 CCDC13Q8IYE1 715 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 RCOR2Q8IZ40 523 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 NPWQ8N729 165 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 UBL4BQ8N7F7 174 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 HDAC2Q92769 488 aaKnown RBP6.19□□□□□ -1.42
USP40-202ENST00000409945 HAUS1Q96CS2 278 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 WRAP53Q9BUR4 548 aaKnown RBP6.19□□□□□ -1.42
USP40-202ENST00000409945 TSGA10Q9BZW7 698 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 NT5MQ9NPB1 228 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 IRAK4Q9NWZ3 460 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 HSPB7Q9UBY9 170 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 ADAMTS9Q9P2N4 1935 aa6.19□□□□□ -1.42
USP40-202ENST00000409945 CACNA1AO00555 2505 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 TRPM6Q9BX84 2022 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 A0A1W2PR77 199 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 TSPAN11A1L157 253 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 CACNB4O00305 520 aaPredicted RBP6.18□□□□□ -1.42
USP40-202ENST00000409945 MFSD11O43934 449 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 GJB3O75712 270 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 LDOC1O95751 146 aaPredicted RBP6.18□□□□□ -1.42
USP40-202ENST00000409945 CHRM5P08912 532 aaPredicted RBP6.18□□□□□ -1.42
USP40-202ENST00000409945 CCNB1P14635 433 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 TCF4P15884 667 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 GSTM2P28161 218 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 TAS2R40P59535 323 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 PEX6Q13608 980 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 KRTAP15-1Q3LI76 137 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 SLC9B1Q4ZJI4 515 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 N4BP2L1Q5TBK1 243 aaPredicted RBP6.18□□□□□ -1.42
USP40-202ENST00000409945 SEL1L3Q68CR1 1132 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 NCBP2-AS2Q69YL0 99 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 RAD9BQ6WBX8 426 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 Q6ZSR6 202 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 MOB3CQ70IA8 216 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 ABI3BPQ7Z7G0 1075 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 MNS1Q8NEH6 495 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 OSR1Q8TAX0 266 aaPredicted RBP6.18□□□□□ -1.42
USP40-202ENST00000409945 RAB40AQ8WXH6 277 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 CNOT9Q92600 299 aaKnown RBP6.18□□□□□ -1.42
USP40-202ENST00000409945 P3H4Q92791 437 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 FAF2Q96CS3 445 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 HDAC11Q96DB2 347 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 TSGA13Q96PP4 275 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 MGME1Q9BQP7 344 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 MOV10Q9HCE1 1003 aaKnown RBP6.18□□□□□ -1.42
USP40-202ENST00000409945 RBM22Q9NW64 420 aaKnown RBP eCLIP6.18□□□□□ -1.42
USP40-202ENST00000409945 ALKBH4Q9NXW9 302 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 ALG6Q9Y672 507 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms