RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 MTPNP58546 118 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 LCLAT1Q6UWP7 414 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 NPNTQ6UXI9 565 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 DPPA2Q7Z7J5 298 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 FTMTQ8N4E7 242 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 SEZ6LQ9BYH1 1024 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 TP63Q9H3D4 680 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-206ENST00000409809 TCEAL2Q9H3H9 227 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-206ENST00000409809 TIGARQ9NQ88 270 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 FGF19O95750 216 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 FRKP42685 505 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-206ENST00000409809 NDST2P52849 883 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 TAS2R20P59543 309 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 EMX2Q04743 252 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 SP140Q13342 867 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 RAB31Q13636 194 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 REEP3Q6NUK4 255 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 SLC27A4Q6P1M0 643 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 ASRGL1Q7L266 308 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 SLC15A4Q8N697 577 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 TAPBPLQ9BX59 468 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 KLHL21Q9UJP4 597 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 ICE1Q9Y2F5 2266 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 HTRA4P83105 476 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-206ENST00000409809 KEAP1Q14145 624 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 PGM5Q15124 567 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 TMEM41BQ5BJD5 291 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 AADACL2Q6P093 401 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 RNF180Q86T96 592 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 COX18Q8N8Q8 333 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 PROKR2Q8NFJ6 384 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 HSH2DQ96JZ2 352 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 OR51J1Q9H342 316 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 H3BMQ9 156 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 PCDH17O14917 1159 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 BANF1O75531 89 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 ORC1Q13415 861 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 DHCR24Q15392 516 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 TAF1AQ15573 450 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-206ENST00000409809 CHRFAM7AQ494W8 412 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 MBLAC2Q68D91 279 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 MTFR2Q6P444 385 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 SYNE4Q8N205 404 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 NXPE1Q8N323 547 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 BIRC7Q96CA5 298 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 KCTD12Q96CX2 325 aaKnown RBP12.51□□□□□ -0.41
COL6A3-206ENST00000409809 COG8Q96MW5 612 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 ST6GALNAC4Q9H4F1 302 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 OPA3Q9H6K4 179 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 FAM159BA6NKW6 160 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 CRISP1P54107 249 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 ERVK-25P63136 954 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 RTL6Q6ICC9 239 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 ZNF101Q8IZC7 436 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 CYP4X1Q8N118 509 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 TCEANCQ8N8B7 351 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 ANGPTL6Q8NI99 470 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 PNPLA2Q96AD5 504 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 EFCAB11Q9BUY7 163 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 SLC19A3Q9BZV2 496 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 GAREM1Q9H706 876 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 COPS7AQ9UBW8 275 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 TUBAL3A6NHL2 446 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 SLC1A7O00341 560 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 YKT6O15498 198 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 SCN2BO60939 215 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 SCNN1AP37088 669 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 TAS2R40P59535 323 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 CXorf40AQ8TE69 158 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 MUSKO15146 869 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 SLC35G6P0C7Q6 338 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 CDK4P11802 303 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 UAP1L1Q3KQV9 507 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 C7orf43Q8WVR3 580 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 SLC35A5Q9BS91 424 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 PCDHAC1Q9H158 963 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 GSKIPQ9P0R6 139 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 PLA2G16P53816 162 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 OR7G3Q8NG95 312 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 ELP4Q96EB1 424 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 NID2Q14112 1375 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 ELOA3DA6NLF2 546 aaPredicted RBP12.5□□□□□ -0.41
COL6A3-206ENST00000409809 CPSF4LA6NMK7 179 aaKnown RBP12.5□□□□□ -0.41
COL6A3-206ENST00000409809 LACTBL1A8MY62 500 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 HTR3BO95264 441 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 TFPTP0C1Z6 253 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 GALK2Q01415 458 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 ELOA3BQ3SY89 546 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 KCTD9Q7L273 389 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 PHYKPLQ8IUZ5 450 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 SUMF2Q8NBJ7 301 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 ELOA3Q8NG57 546 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 PRRT1Q99946 306 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 ZNF487B1APH4 448 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 CSF2P04141 144 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 PROS1P07225 676 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 HSD11B1P28845 292 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 ICAM3P32942 547 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 CAPSQ13938 189 aa12.5□□□□□ -0.41
COL6A3-206ENST00000409809 TMEM31Q5JXX7 168 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms