RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 CCDC177Q9NQR7 707 aaPredicted RBP12.87□□□□□ -0.35
LIMS1-204ENST00000409441 TOR4AQ9NXH8 423 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 EPHA6Q9UF33 1036 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 ATXN7L1Q9ULK2 861 aaPredicted RBP12.87□□□□□ -0.35
LIMS1-204ENST00000409441 SLC22A14Q9Y267 594 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 PCDHB11Q9Y5F2 797 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 PCDHGA1Q9Y5H4 931 aa12.87□□□□□ -0.35
LIMS1-204ENST00000409441 C15orf38-AP3S2A0A0A6YYH1 394 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 CCDC154A6NI56 674 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 SLC28A1O00337 649 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 KATNA1O75449 491 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 RFPL3O75679 317 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 CPNE6O95741 557 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 EBLN1P0CF75 366 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 NPPBP16860 134 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 TCN1P20061 433 aaPredicted RBP12.86□□□□□ -0.35
LIMS1-204ENST00000409441 SDHBP21912 280 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 SLC7A1P30825 629 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 MSX2P35548 267 aaPredicted RBP12.86□□□□□ -0.35
LIMS1-204ENST00000409441 PLA2G5P39877 138 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 SLC6A12P48065 614 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 POLR2JP52435 117 aaKnown RBP12.86□□□□□ -0.35
LIMS1-204ENST00000409441 NME5P56597 212 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 TBPL1P62380 186 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 MAD2L1Q13257 205 aaPredicted RBP12.86□□□□□ -0.35
LIMS1-204ENST00000409441 GRAMD1BQ3KR37 738 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 VPS26BQ4G0F5 336 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 ARPINQ7Z6K5 226 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 SLCO6A1Q86UG4 719 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 THOC6Q86W42 341 aaKnown RBP12.86□□□□□ -0.35
LIMS1-204ENST00000409441 FNDC5Q8NAU1 212 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 OR2A1Q8NGT9 310 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 FLVCR1-AS1Q8TAF5 88 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 LRRC58Q96CX6 371 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 ZDHHC12Q96GR4 267 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 TGM7Q96PF1 710 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 GFM1Q96RP9 751 aaKnown RBP12.86□□□□□ -0.35
LIMS1-204ENST00000409441 MYCBPQ99417 103 aaPredicted RBP12.86□□□□□ -0.35
LIMS1-204ENST00000409441 NUDT22Q9BRQ3 303 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 EFHD1Q9BUP0 239 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 PCBD2Q9H0N5 130 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 CXorf56Q9H5V9 222 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 SCOCQ9UIL1 159 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 PCNX2A6NKB5 2137 aa12.86□□□□□ -0.35
LIMS1-204ENST00000409441 FXYD1O00168 92 aa12.85□□□□□ -0.35
LIMS1-204ENST00000409441 NTN3O00634 580 aaPredicted RBP12.85□□□□□ -0.35
LIMS1-204ENST00000409441 NME4O00746 187 aa12.85□□□□□ -0.35
LIMS1-204ENST00000409441 LSM1O15116 133 aaKnown RBP12.85□□□□□ -0.35
LIMS1-204ENST00000409441 RGS14O43566 566 aa12.85□□□□□ -0.35
LIMS1-204ENST00000409441 PCSK2P16519 638 aa12.85□□□□□ -0.35
LIMS1-204ENST00000409441 UGT2B7P16662 529 aa12.85□□□□□ -0.35
LIMS1-204ENST00000409441 PSMB5P28074 263 aa12.85□□□□□ -0.35
LIMS1-204ENST00000409441 CSF2RBP32927 897 aa12.85□□□□□ -0.35
LIMS1-204ENST00000409441 ARL1P40616 181 aaPredicted RBP12.85□□□□□ -0.35
LIMS1-204ENST00000409441 ZFP36L2P47974 494 aaKnown RBP12.85□□□□□ -0.35
LIMS1-204ENST00000409441 NOVA1P51513 510 aaKnown RBP12.85□□□□□ -0.35
LIMS1-204ENST00000409441 YBX1P67809 324 aaKnown RBP12.85□□□□□ -0.35
LIMS1-204ENST00000409441 SIM1P81133 766 aaPredicted RBP12.85□□□□□ -0.35
LIMS1-204ENST00000409441 CLPPQ16740 277 aaPredicted RBP12.85□□□□□ -0.35
LIMS1-204ENST00000409441 C6orf10Q5SRN2 563 aa12.85□□□□□ -0.35
LIMS1-204ENST00000409441 TMEM71Q6P5X7 295 aa12.85□□□□□ -0.35
LIMS1-204ENST00000409441 SCIMPQ6UWF3 145 aa12.85□□□□□ -0.35
LIMS1-204ENST00000409441 ZNF574Q6ZN55 896 aaPredicted RBP12.85□□□□□ -0.35
LIMS1-204ENST00000409441 FAM92BQ6ZTR7 304 aa12.85□□□□□ -0.35
LIMS1-204ENST00000409441 LRRC70Q7Z2Q7 622 aa12.85□□□□□ -0.35
LIMS1-204ENST00000409441 ZFAND4Q86XD8 727 aa12.85□□□□□ -0.35
LIMS1-204ENST00000409441 DHFR2Q86XF0 187 aa12.85□□□□□ -0.35
LIMS1-204ENST00000409441 TICAM1Q8IUC6 712 aa12.85□□□□□ -0.35
LIMS1-204ENST00000409441 FAM20CQ8IXL6 584 aa12.85□□□□□ -0.35
LIMS1-204ENST00000409441 KLHDC8AQ8IYD2 350 aa12.85□□□□□ -0.35
LIMS1-204ENST00000409441 FAM156AQ8NDB6 213 aa12.85□□□□□ -0.35
LIMS1-204ENST00000409441 CDK15Q96Q40 435 aa12.85□□□□□ -0.35
LIMS1-204ENST00000409441 OR4K3Q96R72 315 aa12.85□□□□□ -0.35
LIMS1-204ENST00000409441 PCDHAC1Q9H158 963 aa12.85□□□□□ -0.35
LIMS1-204ENST00000409441 TMEM9Q9P0T7 183 aa12.85□□□□□ -0.35
LIMS1-204ENST00000409441 TAC3Q9UHF0 121 aa12.85□□□□□ -0.35
LIMS1-204ENST00000409441 POMT2Q9UKY4 750 aa12.85□□□□□ -0.35
LIMS1-204ENST00000409441 CNOT11Q9UKZ1 510 aaKnown RBP12.85□□□□□ -0.35
LIMS1-204ENST00000409441 AP4S1Q9Y587 144 aa12.85□□□□□ -0.35
LIMS1-204ENST00000409441 RP1P56715 2156 aa12.85□□□□□ -0.35
LIMS1-204ENST00000409441 AQP12BA6NM10 295 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 KIF1CO43896 1103 aaKnown RBP12.84□□□□□ -0.35
LIMS1-204ENST00000409441 PIM1P11309 404 aaPredicted RBP12.84□□□□□ -0.35
LIMS1-204ENST00000409441 CDK4P11802 303 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 EPB42P16452 691 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 SLC6A2P23975 617 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 HSPA13P48723 471 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 HTR6P50406 440 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 AQP4P55087 323 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 GFERP55789 205 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 UFM1P61960 85 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 PRDX1Q06830 199 aaKnown RBP12.84□□□□□ -0.35
LIMS1-204ENST00000409441 MED21Q13503 144 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 NFYCQ13952 458 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 SPIDRQ14159 915 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 NR6A1Q15406 480 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 LRRC36Q1X8D7 754 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 PRAMEF13Q5VWM6 474 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 TMEM154Q6P9G4 183 aa12.84□□□□□ -0.35
LIMS1-204ENST00000409441 SPESP1Q6UW49 350 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms