RNA–Protein interactions for RNA: ENST00000406019.1

HMGB1P13-201, Transcript of high mobility group box 1 pseudogene 13, humanhuman

BASIC

Gene HMGB1P13, Length 642 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P13-201ENST00000406019 DNAJB1P25685 340 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 HOXA1P49639 335 aaPredicted RBP4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 CLCN4P51793 760 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 CLDN17P56750 224 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 KCNJ10P78508 379 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 PPP1R8Q12972 351 aaKnown RBP4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 DPYSQ14117 519 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 OPCMLQ14982 345 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 ZKSCAN8Q15776 578 aaPredicted RBP4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 WSCD2Q2TBF2 565 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 HERC4Q5GLZ8 1057 aaPredicted RBP4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 ARMCX4Q5H9R4 360 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 C9orf50Q5SZB4 431 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 C20orf194Q5TEA3 1177 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 PRAMEF7Q5VXH5 474 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 UNQ6126/PRO20091Q6UXV3 157 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 ZNF852Q6ZMS4 543 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 KCTD8Q6ZWB6 473 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 TUBA1AQ71U36 451 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 TAF8Q7Z7C8 310 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 SYVN1Q86TM6 617 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 NR2C2APQ86WQ0 139 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 NAGSQ8N159 534 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 THEM5Q8N1Q8 247 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 LRTM2Q8N967 370 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 DNASE2BQ8WZ79 361 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 PIK3R3Q92569 461 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 HAS2Q92819 552 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 LGALS12Q96DT0 336 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 GUCD1Q96NT3 240 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 CDCA3Q99618 268 aaPredicted RBP4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 TUBA1CQ9BQE3 449 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 NTMT1Q9BV86 223 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 TRMT61BQ9BVS5 477 aaKnown RBP4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 DDX47Q9H0S4 455 aaKnown RBP4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 CPVLQ9H3G5 476 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 SOHLH2Q9NX45 425 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 RAI14Q9P0K7 980 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 NUDCQ9Y266 331 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 SH3GLB1Q9Y371 365 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 AP1M2Q9Y6Q5 423 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 TCF20Q9UGU0 1960 aaKnown RBP4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 SMCHD1A6NHR9 2005 aa4.43□□□□□ -1.7
HMGB1P13-201ENST00000406019 SSX5O60225 188 aa4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 PRKNO60260 465 aaPredicted RBP4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 NOL3O60936 208 aaKnown RBP4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 KRT36O76013 467 aa4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 YES1P07947 543 aa4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 NUDT17P0C025 328 aa4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 CPA3P15088 417 aa4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 ZNF18P17022 549 aa4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 CHRNA3P32297 505 aa4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 TNFSF10P50591 281 aa4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 KARSQ15046 597 aaKnown RBP4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 TAF1BQ53T94 588 aaPredicted RBP4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 ZNF542PQ5EBM4 170 aa4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 XKR6Q5GH73 641 aa4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 UGT3A1Q6NUS8 523 aa4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 SLC16A9Q7RTY1 509 aa4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 COX8CQ7Z4L0 72 aa4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 OR4A16Q8NH70 328 aa4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 ESAMQ96AP7 390 aa4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 ULK4Q96C45 1275 aa4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 C4orf45Q96LM5 186 aa4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 SPAG8Q99932 426 aaPredicted RBP4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 DPEP3Q9H4B8 488 aa4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 RPF1Q9H9Y2 349 aaKnown RBP4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 NGBQ9NPG2 151 aa4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 FAM212BQ9NTI7 297 aaPredicted RBP4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 IL36AQ9UHA7 158 aa4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 PSORS1C1Q9UIG5 152 aa4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 RIPK3Q9Y572 518 aa4.42□□□□□ -1.7
HMGB1P13-201ENST00000406019 IGLV9-49A0A0B4J1Y8 123 aa4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 DENND3A2RUS2 1198 aa4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 MTMR11A4FU01 709 aa4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 E5RGE8 158 aa4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 ATP6V0E1O15342 81 aa4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 ZNF432O94892 652 aa4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 GAS8O95995 478 aa4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 IFNB1P01574 187 aa4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 F7P08709 466 aaPredicted RBP4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 FRMD6-AS1P0C7T7 363 aa4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 KRT5P13647 590 aa4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 FUT1P19526 365 aa4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 ALDH4A1P30038 563 aa4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 SSR1P43307 286 aaKnown RBP4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 FMO5P49326 533 aa4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 IFT88Q13099 833 aa4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 DMP1Q13316 513 aaPredicted RBP4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 CEBPEQ15744 281 aa4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 FASTKD1Q53R41 847 aaKnown RBP4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 PDSS1Q5T2R2 415 aa4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 MEX3BQ6ZN04 569 aaKnown RBP4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 DNAJC22Q8N4W6 341 aa4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 SMYD1Q8NB12 490 aa4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 SLC24A4Q8NFF2 622 aa4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 CCDC110Q8TBZ0 833 aa4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 BTBD9Q96Q07 612 aa4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 ASCL2Q99929 193 aa4.41□□□□□ -1.7
HMGB1P13-201ENST00000406019 LRRC2Q9BYS8 371 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms