RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 TTC3P53804 2025 aa17.87■□□□□ 0.45
USP48-204ENST00000400301 ZDHHC11BP0C7U3 371 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 MFSD4BQ5TF39 518 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 SHQ1Q6PI26 577 aaKnown RBP17.86■□□□□ 0.45
USP48-204ENST00000400301 DRAXINQ8NBI3 349 aaPredicted RBP17.86■□□□□ 0.45
USP48-204ENST00000400301 POF1BQ8WVV4 589 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 PAWRQ96IZ0 340 aaKnown RBP17.86■□□□□ 0.45
USP48-204ENST00000400301 KCNS3Q9BQ31 491 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 POLR2J2Q9GZM3 115 aaKnown RBP17.86■□□□□ 0.45
USP48-204ENST00000400301 NUAK1O60285 661 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 PPIGQ13427 754 aaKnown RBP eCLIP17.86■□□□□ 0.451e-6■■■□□ 15.3
USP48-204ENST00000400301 PYDC2Q56P42 97 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 HTR3DQ70Z44 454 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 ZNF548Q8NEK5 533 aaPredicted RBP17.86■□□□□ 0.45
USP48-204ENST00000400301 OR7G3Q8NG95 312 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 WBP2Q969T9 261 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 CAB39Q9Y376 341 aaPredicted RBP17.86■□□□□ 0.45
USP48-204ENST00000400301 PCDHGB5Q9Y5G0 923 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 SCAMP2O15127 329 aaKnown RBP17.86■□□□□ 0.45
USP48-204ENST00000400301 MAGEB3O15480 346 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 ATE1O95260 518 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 SOX14O95416 240 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 ALPLP05186 524 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 HTR1BP28222 390 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 FEN1P39748 380 aaKnown RBP17.86■□□□□ 0.45
USP48-204ENST00000400301 NCBP2P52298 156 aaKnown RBP eCLIP17.86■□□□□ 0.452e-8■■■□□ 17.4
USP48-204ENST00000400301 GABARAPL2P60520 117 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 IER5LQ5T953 404 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 TMEM236Q5W0B7 351 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 USP30Q70CQ3 517 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 SLC30A8Q8IWU4 369 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 RGMAQ96B86 450 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 FEVQ99581 238 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 SLC46A2Q9BY10 475 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 RNF6Q9Y252 685 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 EDDM13A0A1B0GTR0 161 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 H1F0P07305 194 aaKnown RBP17.86■□□□□ 0.45
USP48-204ENST00000400301 AMD1P17707 334 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 HRH2P25021 359 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 PCSK6P29122 969 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 HLA-FP30511 346 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 HSD11B1LQ7Z5J1 315 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 HCFC1R1Q9NWW0 138 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 ITM2BQ9Y287 266 aa17.86■□□□□ 0.45
USP48-204ENST00000400301 ZNF701M0R085 212 aaPredicted RBP17.85■□□□□ 0.45
USP48-204ENST00000400301 DNAJB5O75953 348 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 IL3P08700 152 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 AOAHP28039 575 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 SHMT2P34897 504 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 XKP51811 444 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 PRR5P85299 388 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 MSANTD1Q6ZTZ1 278 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 AKAP14Q86UN6 197 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 C9orf43Q8TAL5 461 aaPredicted RBP17.85■□□□□ 0.45
USP48-204ENST00000400301 GAB3Q8WWW8 586 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 ASB11Q8WXH4 323 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 NAA50Q9GZZ1 169 aaKnown RBP17.85■□□□□ 0.45
USP48-204ENST00000400301 WDR26Q9H7D7 661 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 FAM92AA1XBS5 289 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 ARHGEF33A8MVX0 844 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 CRISP3P54108 245 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 GSTM4Q03013 218 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 CDK5R2Q13319 367 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 SLC9A5Q14940 896 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 KLHL12Q53G59 568 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 REEP3Q6NUK4 255 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 GPR149Q86SP6 731 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 DCUN1D3Q8IWE4 304 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 SPARTQ8N0X7 666 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 CPXM2Q8N436 756 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 URADA6NGE7 173 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 TLR4O00206 839 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 TNFRSF1BP20333 461 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 NTHL1P78549 312 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 DEFB103AP81534 67 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 FAM131AQ6UXB0 335 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 SLC39A5Q6ZMH5 540 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 HDDC3Q8N4P3 179 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 PHF21AQ96BD5 680 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 OTUB2Q96DC9 234 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 LRIG1Q96JA1 1093 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 SLC7A5P2Q9GIP4 190 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 GIN1Q9NXP7 522 aa17.85■□□□□ 0.45
USP48-204ENST00000400301 H7BY64 318 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 CASKO14936 926 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 CD247P20963 164 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 APOFQ13790 326 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 PRAP1Q96NZ9 151 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 TLR9Q9NR96 1032 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 IL37Q9NZH6 218 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 WBP11Q9Y2W2 641 aaKnown RBP17.84■□□□□ 0.45
USP48-204ENST00000400301 TAPBPO15533 448 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 POLR2IP36954 125 aaKnown RBP17.84■□□□□ 0.45
USP48-204ENST00000400301 CSNK1DP48730 415 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 TRIM71Q2Q1W2 868 aaKnown RBP17.84■□□□□ 0.45
USP48-204ENST00000400301 ZNF404Q494X3 552 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 CRB2Q5IJ48 1285 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 LAPTM4BQ86VI4 370 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 FAM129CQ86XR2 697 aa17.84■□□□□ 0.45
USP48-204ENST00000400301 LCN9Q8WX39 176 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms